Gene
| Gene Model ID | pfu_aug1.0_16617.1_18364 |
|---|---|
| Locus | scaffold16617.1 : 11706 ... 14989 : + |
| To GenomeBrowser | scaffold16617.1:11706..14989 |
| Genes list of scaffold | scaffold16617.1 |
| Synonym | NA |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | cytidine deaminase |
| Description | Best hit to EU101721 (abalone). 164 bits, 8e-39 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16617.1_18364.t1 | 2 | 1 | dCMP_cyt_deam_2 | 61 | 128 | 9.1e-09 | 35.3 | 3.7e-12 | 2.8e-08 | 33.8 |
| pfu_aug1.0_16617.1_18364.t1 | 1 | 1 | dCMP_cyt_deam_1 | 63 | 158 | 6.8e-18 | 64.2 | 1.3e-21 | 9.4e-18 | 63.7 |
| pfu_aug1.0_16617.1_18364.t1 | 2 | 2 | dCMP_cyt_deam_2 | 179 | 191 | 9.1e-09 | 35.3 | 0.26 | 2000.0 | -1.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16617.1_18364.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16617.1_18364.t1 atgtctaaccggaatatcgggcgcatgaaatatcgggaaataacgtctgaagttaaaaaggtattactcgacagatcttc catnacctctcaccgataccctggaggacaagtgcatctttctgacatcttccttttaggacacttaacggcaattcgaa tggagctgaactcattagacaagcgtatccaggacttggtgaaagcagcgatagaggtcaaagccaacgcctattgtcct tacagcaactttcgtgttggtgcttcactgctgacagaaaacgatgttattataacaggctgtaacgtagagaatgcatc ttatgggctatctgtttgtgcagaacgagtagctattatgtctgctgtgtcacaaggtcacaccaagttcaaggctgcgg cagtttcatgtgacattaaaggagacttcaaagctccgtgtggtgcttgtagacagttttatgccgagttcaacttggac cttgacctttacctagtgaagccagacaatacagtgaaatgtgtcaaaatcagagacgttttaccgatggcgtttacacc gcagtcactcgaagaagacagaatctaa |
|
Protein
| Protein ID | pfu_aug1.0_16617.1_18364.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16617.1_18364.t1 MSNRNIGRMKYREITSEVKKVLLDRSSXTSHRYPGGQVHLSDIFLLGHLTAIRMELNSLDKRIQDLVKAAIEVKANAYCP YSNFRVGASLLTENDVIITGCNVENASYGLSVCAERVAIMSAVSQGHTKFKAAAVSCDIKGDFKAPCGACRQFYAEFNLD LDLYLVKPDNTVKCVKIRDVLPMAFTPQSLEEDRI |
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