Gene
| Gene Model ID | pfu_aug1.0_16646.1_03736 |
|---|---|
| Locus | scaffold16646.1 : 26009 ... 37040 : - |
| To GenomeBrowser | scaffold16646.1:26009..37040 |
| Genes list of scaffold | scaffold16646.1 |
| Synonym | pfu_aug2.0_21.1_03438 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16646.1_03736.t1 | 1 | 1 | GTP_EFTU | 38 | 144 | 1.8e-29 | 102.4 | 1.3e-32 | 3.2e-29 | 101.6 |
| pfu_aug1.0_16646.1_03736.t1 | 1 | 1 | GTP_EFTU_D2 | 310 | 384 | 3.4e-11 | 43.0 | 2.5e-14 | 6.2e-11 | 42.2 |
| pfu_aug1.0_16646.1_03736.t1 | 1 | 1 | EFG_IV | 472 | 588 | 1.5e-28 | 98.7 | 1.2e-31 | 3.0e-28 | 97.7 |
| pfu_aug1.0_16646.1_03736.t1 | 1 | 1 | EFG_C | 592 | 679 | 8.4e-22 | 76.8 | 1.9e-24 | 4.6e-21 | 74.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16646.1_03736.t1 | gi|291225920|ref|XP_002732943.1| | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16646.1_03736.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16646.1_03736.t1 aaccaatcattgctcctgtgaagaagaagaagttttcaatggcagagcaggacctaccattgactacatacaacatggag tttttagctgatttaatggacacaccagaactgataagaaacgtcactctgtgtggtcatttacatcatggaaagacaac atttgttgactgcctgatagaacagacacatccagagatacagagtaaagatgataaagatatacgttatacagacacac ttttcacagaacaggagcgaggcgttagtatcaagtccacacctgtaacgatggtcctgccagactcacgtaacaaatcc ttcctgatgaatgtgtatgacacacctggacatgtgaatttctcagatgaggtaacggctgcttttcgtctgagtgatgg tgtagtggtatttattgatgccgcagaagggatattttttgtttttgtaggtggaatcaatgacaaagagtttgcaagga gactttggggtgatatttatttcaatagtaatacgagaaaattcacaaagaaagctccagcaagttcagcacaaagaagt tttgttgaatttatattggaacccttatataaattatttgcacaggttgtaggggatgtagacgagtgtttaccccgact ctgtgatgaactgggaatctcactcaccaaagaagaacgcaagctcaatatcagacctctccttaggattgtgtgtaata ggttctttggtagcttcacaggatttgtcgacatgtgtgtggagcatataaaatctccactgaccaatgcccagattaag gtagagcacatctatactggaccatcagacagtgatctggctgaaatgatgcatgcttgtgatgctgatggacctttgat ggtacacacaaccaagttgtaccccacacaagacgccacaagcttccatgtatttggtcgtattgttagtggtacgttgt atgccaaccaggaggtgagaattctgggagaaaattactcactgcaggatgaggaggactctagatttggtcaggttgga cgactgtgggtcacagaagcaagatataagattgaggtgaacagagtaccagctggtaactggatccttatagaaggtat agatcaacctatcgtcaaaacatcgactatcactgatgtctccagtaatgaagagcatatagttttaggaactggagaac tttacctggattgtgtcatgcatgatctcaggaagatgtactcagaaatagatataaaggtagctgaccctgttgtgtca ttttgtgagacagtagtggaaacatcatccctcaaatgttttgctgaaacgccaaataaaagaaacaagttaacaatgat tgctgagcctttggagaaaggattagcagaggatatagagaatgaggtagtacagataacatggcccaggaaaagattag gagagttcttccagaccaagtacgactgggatttgttggcagctagatctatatgggcatttggacctgactcaacagga ccaaatattctggtggacgacactctgccctcagaggtagataaaagtttgctaggagctgtgaaggacagtattgtaca aggtttccagtgggccaccagggaaggtccattgtgtgatgaaccaataagaaatgtaaagttcaagattctggatgcag tgatagcccaggaacctttacacaggggaggtggacagattattccaacagccagacgtgtggcttactcagcttttctt atggccacccctagaatgatggaaccctactattttgtagaagttatggcccctgctgattgtgtgtctgcagtatatac agttcttgctaaaagaagaggtcatgtgacacaggatgcacccgtacctggatcaccattatacactatcaaagccttca tacctgctatagactcatttggttttgagacagacttacggacacacactcagggacaagcattctgtctgtctgtgttt catcactggcagatcgtcccaggagatcctctggataagagcattattattaggcctttggaagctcaacccgcaacgca tctggccagagaatttatgattaaatcacggagacgaaaggtatgttgtagaatttttaaaggaaataaagaaatgttgt tataa |
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Protein
| Protein ID | pfu_aug1.0_16646.1_03736.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16646.1_03736.t1 PIIAPVKKKKFSMAEQDLPLTTYNMEFLADLMDTPELIRNVTLCGHLHHGKTTFVDCLIEQTHPEIQSKDDKDIRYTDTL FTEQERGVSIKSTPVTMVLPDSRNKSFLMNVYDTPGHVNFSDEVTAAFRLSDGVVVFIDAAEGIFFVFVGGINDKEFARR LWGDIYFNSNTRKFTKKAPASSAQRSFVEFILEPLYKLFAQVVGDVDECLPRLCDELGISLTKEERKLNIRPLLRIVCNR FFGSFTGFVDMCVEHIKSPLTNAQIKVEHIYTGPSDSDLAEMMHACDADGPLMVHTTKLYPTQDATSFHVFGRIVSGTLY ANQEVRILGENYSLQDEEDSRFGQVGRLWVTEARYKIEVNRVPAGNWILIEGIDQPIVKTSTITDVSSNEEHIVLGTGEL YLDCVMHDLRKMYSEIDIKVADPVVSFCETVVETSSLKCFAETPNKRNKLTMIAEPLEKGLAEDIENEVVQITWPRKRLG EFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKSLLGAVKDSIVQGFQWATREGPLCDEPIRNVKFKILDAV IAQEPLHRGGGQIIPTARRVAYSAFLMATPRMMEPYYFVEVMAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFI PAIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLDKSIIIRPLEAQPATHLAREFMIKSRRRKVCCRIFKGNKEMLL |
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