Gene
| Gene Model ID | pfu_aug1.0_166749.1_28497 |
|---|---|
| Locus | scaffold166749.1 : 1 ... 873 : + |
| To GenomeBrowser | scaffold166749.1:1..873 |
| Genes list of scaffold | scaffold166749.1 |
| Synonym | pfu_aug2.0_4573.1_12676 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | 000493 |
| Description | calcium binding |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_166749.1_28497.t1 | 1 | 1 | EF-hand_7 | 18 | 65 | 1.3e-07 | 31.6 | 1.1e-10 | 2.0e-07 | 31.0 |
| pfu_aug1.0_166749.1_28497.t1 | 2 | 1 | EF-hand_1 | 19 | 37 | 3.2e-07 | 29.1 | 0.019 | 35.0 | 4.0 |
| pfu_aug1.0_166749.1_28497.t1 | 2 | 1 | EF-hand_6 | 19 | 37 | 2.7e-06 | 26.8 | 0.0023 | 4.3 | 7.4 |
| pfu_aug1.0_166749.1_28497.t1 | 2 | 1 | EF-hand_5 | 20 | 34 | 2.2e-06 | 26.7 | 0.075 | 140.0 | 2.0 |
| pfu_aug1.0_166749.1_28497.t1 | 1 | 1 | EF-hand_8 | 24 | 64 | 3.4e-07 | 29.7 | 3.0e-10 | 5.6e-07 | 29.0 |
| pfu_aug1.0_166749.1_28497.t1 | 2 | 2 | EF-hand_1 | 44 | 67 | 3.2e-07 | 29.1 | 1.2e-08 | 2.2e-05 | 23.4 |
| pfu_aug1.0_166749.1_28497.t1 | 2 | 2 | EF-hand_5 | 45 | 62 | 2.2e-06 | 26.7 | 2.2e-08 | 4.0e-05 | 22.7 |
| pfu_aug1.0_166749.1_28497.t1 | 2 | 2 | EF-hand_6 | 45 | 65 | 2.7e-06 | 26.8 | 8.9e-07 | 0.0016 | 18.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_166749.1_28497.t1 | gi|73427354|gb|AAZ76260.1| | mantle gene 6 [Pinctada fucata] | 6.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_166749.1_28497.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_166749.1_28497.t1 aaaaaagggaaattcaacatcgatttaatgttggatccctgtgaacttatgtcatacgataacaacattgacggattggt tacacatgaggatatcaaaaagatattcaacaacgcggagttggccgaagtgctcttcaaagaggcagatcaaaacgatg atggccagatttcggcaagtgaatttgttgtcatcacaagaagcattaacggatgtcaagaggaagtgtaa |
|
Protein
| Protein ID | pfu_aug1.0_166749.1_28497.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_166749.1_28497.t1 KKGKFNIDLMLDPCELMSYDNNIDGLVTHEDIKKIFNNAELAEVLFKEADQNDDGQISASEFVVITRSINGCQEEV |
|