Gene
| Gene Model ID | pfu_aug1.0_16692.1_03744 |
|---|---|
| Locus | scaffold16692.1 : 816 ... 10423 : + |
| To GenomeBrowser | scaffold16692.1:816..10423 |
| Genes list of scaffold | scaffold16692.1 |
| Synonym | pfu_aug2.0_1914.1_15309 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | vertebrate ancient opsin |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16692.1_03744.t1 | 1 | 1 | 7tm_1 | 27 | 110 | 5.5e-10 | 38.8 | 8.8e-14 | 6.5e-10 | 38.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16692.1_03744.t1 | gi|260828153|ref|XP_002609028.1| | hypothetical protein BRAFLDRAFT_84844 [Branchiostoma floridae] | 8.0e-17 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_16692.1_03744.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16692.1_03744.t1 atgctcaactttcgcgtcttgccgcgtctcccacaagttttcatcactgccggaacacggattatcatatcgaacatcaa gtgggtgctgattgcaatatgggcatattctttgatatggaccggacctcccttgattggctggagcaaatatacattgg agaagtatggtacctcctgtacgatcaactggtatggccgggaaatcggggacttgtcttataacacagttatcacattt acttgcttcgtggtccatgccaccattttcatcttctgctactctaacatcatcagacaatacaaagttgcagacaacct gaaggaccgcacagtgacggcagatgatgacaacgagaactccatgaacatagaggatgttgtctggtaccacaaagtca ccacatccagaagtattactttgacttcccttggaatgatatcggcnatataccttagcatggactccctacgccatcat cagtatatgggtgatgtatatatccgatgtcccagtgtggattcacgttctacctacgatgatgggaaagtcagcgtgtc tggtcaatcctatcgtttatggtatttgtag |
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Protein
| Protein ID | pfu_aug1.0_16692.1_03744.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16692.1_03744.t1 MLNFRVLPRLPQVFITAGTRIIISNIKWVLIAIWAYSLIWTGPPLIGWSKYTLEKYGTSCTINWYGREIGDLSYNTVITF TCFVVHATIFIFCYSNIIRQYKVADNLKDRTVTADDDNENSMNIEDVVWYHKVTTSRSITLTSLGMISXIYLSMDSLRHH QYMGDVYIRCPSVDSRSTYDDGKVSVSGQSYRLWYL |
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