Gene
| Gene Model ID | pfu_aug1.0_16706.1_18373 |
|---|---|
| Locus | scaffold16706.1 : 14114 ... 19495 : - |
| To GenomeBrowser | scaffold16706.1:14114..19495 |
| Genes list of scaffold | scaffold16706.1 |
| Synonym | pfu_aug2.0_127.1_23533 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16706.1_18373.t1 | 1 | 1 | IMS_C | 48 | 181 | 3.1e-07 | 30.3 | 1.6e-10 | 7.9e-07 | 29.0 |
| pfu_aug1.0_16706.1_18373.t1 | 3 | 1 | DUF4414 | 330 | 357 | 1.9e-07 | 30.9 | 1.2e-05 | 0.058 | 13.3 |
| pfu_aug1.0_16706.1_18373.t1 | 3 | 2 | DUF4414 | 425 | 460 | 1.9e-07 | 30.9 | 0.46 | 2300.0 | -1.5 |
| pfu_aug1.0_16706.1_18373.t1 | 3 | 3 | DUF4414 | 470 | 502 | 1.9e-07 | 30.9 | 6.7e-06 | 0.033 | 14.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16706.1_18373.t1 | gi|213513962|ref|NP_001133709.1| | DNA polymerase iota [Salmo salar] | 4.0e-34 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_16706.1_18373.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16706.1_18373.t1 atgatgaagagattagagtcgttgggtatatacactgtgacagacctacagaattactgtctaaatgacctcaaatcaca gctaggtgaatctcaggcagaacacatccataggctgagtatgggaatagatgaagacatggttcacacgtatgggaaac ctcagacaatcagtgatgaagattcatacaattataagaaatgctgtacattggttgatgcacgtggaaagattaggagc cttcttcttaacctcataaaaagattagaggaagatgatcgcctagcgggaacaatgaggttaacgatttgtaggataat tgacaacaagttcagaaatcgagagtctaagcagtgccccctaccaccaagtctgatgagtaaaatatcatctaaggcag atgatgtaatacagaggctggaggccctggcactgtcactactacagaagattgtcgacaccagcaagcctttccagatc gctcttatgaacattgcattctgtaatttacaggagaaagccaaaaactccataagtttattcttctctccaaaggcaaa actctcagagaattcacttcagagtcatgactttgtatataaagacagaagtaactgttcagtgatagttagacgtgact cggggcagaaagatctgtcacacagtaatacacaaacaaatgaaaggtgtctattgttatctcagaaaagtgggaaggaa acagttcattcagtagaaaatacagacattcctcctggagctgtagtgtgcacgtcatcggctgagaagagaaaatctct acaaaatgatgaaccctcctcaaagaagccaaaacaaagcaatgatttacatggacctagttcttacgacagacacaatc catctagtgaggaaaggaaaaccagcatcagtacttgtgacagtcaaaatagttgtcaaggaaagaaatcccatgaagga tcagattctttggcctctgttggtgagattgacctttgtgtacttgctgagttgcctgttaacatacgggaagagatcat gtcacagctaacagccggacagaaagcaaaccttacatcaatgacccccatgacctcaactaagtcaaggtcagattgtg gtgttaaaacttctcatagaagcattataagtcattcccaaagtatttttgatgataaatgtgttgaaagcatggaggag aaaaatgctctgaaaatgattagaaacacagaatgtgatcatggacatacagtatcacagtttaatgaagatttaaatga aaaaaagagaaattctacagtgctaacatctcagtgtcaagctgtacaatctgacagtgcagtcccaagtagctctgtca cacccctccctagtaacatagacaaatctgacagtgcagtcccaagtagttctgtcacacccctccctagtaacatagac agggaagttttccttagccttcctcctgacatacagagggaggtgttaggggatcaacaaggcttactgacccccaagct tcacagcactgatactaaaagcaaggcatcaaaaggacaagtcaggaaaaacactacaaagaaaactaggtcaaacacag atggtaacattctgaagttttttaataaaaatccgtaa |
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Protein
| Protein ID | pfu_aug1.0_16706.1_18373.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16706.1_18373.t1 MMKRLESLGIYTVTDLQNYCLNDLKSQLGESQAEHIHRLSMGIDEDMVHTYGKPQTISDEDSYNYKKCCTLVDARGKIRS LLLNLIKRLEEDDRLAGTMRLTICRIIDNKFRNRESKQCPLPPSLMSKISSKADDVIQRLEALALSLLQKIVDTSKPFQI ALMNIAFCNLQEKAKNSISLFFSPKAKLSENSLQSHDFVYKDRSNCSVIVRRDSGQKDLSHSNTQTNERCLLLSQKSGKE TVHSVENTDIPPGAVVCTSSAEKRKSLQNDEPSSKKPKQSNDLHGPSSYDRHNPSSEERKTSISTCDSQNSCQGKKSHEG SDSLASVGEIDLCVLAELPVNIREEIMSQLTAGQKANLTSMTPMTSTKSRSDCGVKTSHRSIISHSQSIFDDKCVESMEE KNALKMIRNTECDHGHTVSQFNEDLNEKKRNSTVLTSQCQAVQSDSAVPSSSVTPLPSNIDKSDSAVPSSSVTPLPSNID REVFLSLPPDIQREVLGDQQGLLTPKLHSTDTKSKASKGQVRKNTTKKTRSNTDGNILKFFNKNP |
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