Gene
| Gene Model ID | pfu_aug1.0_16741.1_03755 |
|---|---|
| Locus | scaffold16741.1 : 22562 ... 32680 : - |
| To GenomeBrowser | scaffold16741.1:22562..32680 |
| Genes list of scaffold | scaffold16741.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16741.1_03755.t1 | 2 | 1 | Seryl_tRNA_N | 13 | 98 | 3.0e-08 | 33.6 | 1.4e-11 | 6.9e-08 | 32.4 |
| pfu_aug1.0_16741.1_03755.t1 | 2 | 2 | Seryl_tRNA_N | 71 | 103 | 3.0e-08 | 33.6 | 0.039 | 190.0 | 2.0 |
| pfu_aug1.0_16741.1_03755.t1 | 1 | 1 | tRNA-synt_2b | 102 | 224 | 4.6e-22 | 78.4 | 1.1e-25 | 5.6e-22 | 78.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16741.1_03755.t1 | gi|119576774|gb|EAW56370.1| | seryl-tRNA synthetase, isoform CRA_f [Homo sapiens] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16741.1_03755.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16741.1_03755.t1 ctccgatacgtttttgccctaaacacaaggaaaatggtgttagatattgaactttttcgttcggacaaaggcggagatcc tgctaaaataagagaaaaccagtcaaagcgatttaaagatgtcacacttgtggataaagtggtcgaaaacgacaccgaat ggcgaaaaatcgtgcaaatcaaagagctgaaatccctgatagaacagcaaaaagttcagaatgctgccgacctggtcaaa catgaaacagacaggaatgaagctctgaaggaagtggctaacttaacacacgagacgtgtataatcagtaacgatgaggt gataggtaaaggaagtgagaagggagatgacagtaccctggatgagaagtacctgatagccacgtcagaacagccaattg ctgcttaccatagggacgaatggatacccactgaatcactaccaatcaaatatctaggttactctacatgcttcagacaa gaggttggctcacatggacgagatacaagaggcatcttcagggtccatcagtttgaaaaggtagaacaatttgtactgac atcaccgtttgaaaacaagtcatgggaaatgtttgatgagatgataaaaaatgcagaggactttaatcagctccttggaa tcccttatagaattgtcaatattgtctcaggtatactacatgtgcattaa |
|
Protein
| Protein ID | pfu_aug1.0_16741.1_03755.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16741.1_03755.t1 LRYVFALNTRKMVLDIELFRSDKGGDPAKIRENQSKRFKDVTLVDKVVENDTEWRKIVQIKELKSLIEQQKVQNAADLVK HETDRNEALKEVANLTHETCIISNDEVIGKGSEKGDDSTLDEKYLIATSEQPIAAYHRDEWIPTESLPIKYLGYSTCFRQ EVGSHGRDTRGIFRVHQFEKVEQFVLTSPFENKSWEMFDEMIKNAEDFNQLLGIPYRIVNIVSGILHVH |
|