Gene
| Gene Model ID | pfu_aug1.0_167824.1_64642 |
|---|---|
| Locus | scaffold167824.1 : 1 ... 762 : + |
| To GenomeBrowser | scaffold167824.1:1..762 |
| Genes list of scaffold | scaffold167824.1 |
| Synonym | pfu_aug2.0_952.1_08030 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_167824.1_64642.t1 | 3 | 1 | LRR_8 | 9 | 72 | 3.1e-27 | 94.0 | 6.0e-12 | 1.1e-08 | 34.6 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 1 | LRR_1 | 9 | 30 | 7.0e-17 | 58.8 | 0.00028 | 0.52 | 10.5 |
| pfu_aug1.0_167824.1_64642.t1 | 5 | 1 | LRR_4 | 11 | 44 | 2.8e-25 | 87.4 | 4.3e-10 | 7.9e-07 | 28.5 |
| pfu_aug1.0_167824.1_64642.t1 | 2 | 1 | LRR_9 | 11 | 61 | 4.9e-08 | 32.7 | 0.065 | 120.0 | 2.1 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 1 | LRR_6 | 12 | 28 | 3.8e-11 | 41.8 | 0.15 | 290.0 | 2.0 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 1 | LRR_7 | 13 | 22 | 8.3e-12 | 43.2 | 0.37 | 690.0 | 1.3 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 2 | LRR_6 | 30 | 43 | 3.8e-11 | 41.8 | 3.6e-05 | 0.067 | 13.2 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 2 | LRR_1 | 32 | 49 | 7.0e-17 | 58.8 | 0.00014 | 0.25 | 11.5 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 2 | LRR_7 | 32 | 44 | 8.3e-12 | 43.2 | 0.0019 | 3.6 | 8.2 |
| pfu_aug1.0_167824.1_64642.t1 | 5 | 2 | LRR_4 | 60 | 75 | 2.8e-25 | 87.4 | 0.0021 | 3.9 | 7.2 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 3 | LRR_7 | 60 | 75 | 8.3e-12 | 43.2 | 0.026 | 48.0 | 4.7 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 3 | LRR_6 | 60 | 73 | 3.8e-11 | 41.8 | 0.014 | 25.0 | 5.3 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 3 | LRR_1 | 61 | 73 | 7.0e-17 | 58.8 | 0.032 | 59.0 | 4.2 |
| pfu_aug1.0_167824.1_64642.t1 | 3 | 2 | LRR_8 | 88 | 146 | 3.1e-27 | 94.0 | 9.6e-13 | 1.8e-09 | 37.2 |
| pfu_aug1.0_167824.1_64642.t1 | 5 | 3 | LRR_4 | 88 | 124 | 2.8e-25 | 87.4 | 3.2e-11 | 6.0e-08 | 32.1 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 4 | LRR_1 | 88 | 108 | 7.0e-17 | 58.8 | 0.00056 | 1.0 | 9.6 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 4 | LRR_7 | 88 | 101 | 8.3e-12 | 43.2 | 0.0054 | 10.0 | 6.8 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 4 | LRR_6 | 88 | 99 | 3.8e-11 | 41.8 | 0.036 | 66.0 | 4.0 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 5 | LRR_6 | 109 | 122 | 3.8e-11 | 41.8 | 0.00081 | 1.5 | 9.1 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 5 | LRR_7 | 110 | 123 | 8.3e-12 | 43.2 | 0.00043 | 0.79 | 10.1 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 5 | LRR_1 | 111 | 123 | 7.0e-17 | 58.8 | 0.00054 | 1.0 | 9.6 |
| pfu_aug1.0_167824.1_64642.t1 | 2 | 2 | LRR_9 | 131 | 221 | 4.9e-08 | 32.7 | 8.6e-11 | 1.6e-07 | 31.0 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 6 | LRR_6 | 135 | 146 | 3.8e-11 | 41.8 | 0.0015 | 2.9 | 8.2 |
| pfu_aug1.0_167824.1_64642.t1 | 5 | 4 | LRR_4 | 136 | 173 | 2.8e-25 | 87.4 | 1.7e-07 | 0.00031 | 20.2 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 6 | LRR_1 | 136 | 152 | 7.0e-17 | 58.8 | 0.0011 | 2.0 | 8.7 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 6 | LRR_7 | 136 | 153 | 8.3e-12 | 43.2 | 0.012 | 23.0 | 5.7 |
| pfu_aug1.0_167824.1_64642.t1 | 3 | 3 | LRR_8 | 157 | 197 | 3.1e-27 | 94.0 | 1.3e-11 | 2.4e-08 | 33.6 |
| pfu_aug1.0_167824.1_64642.t1 | 5 | 5 | LRR_4 | 157 | 199 | 2.8e-25 | 87.4 | 4.3e-09 | 7.9e-06 | 25.3 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 7 | LRR_1 | 157 | 176 | 7.0e-17 | 58.8 | 0.0002 | 0.38 | 10.9 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 7 | LRR_7 | 157 | 170 | 8.3e-12 | 43.2 | 0.12 | 230.0 | 2.7 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 7 | LRR_6 | 157 | 170 | 3.8e-11 | 41.8 | 0.0077 | 14.0 | 6.1 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 8 | LRR_1 | 181 | 198 | 7.0e-17 | 58.8 | 0.0002 | 0.37 | 10.9 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 8 | LRR_7 | 181 | 195 | 8.3e-12 | 43.2 | 0.0004 | 0.74 | 10.2 |
| pfu_aug1.0_167824.1_64642.t1 | 8 | 8 | LRR_6 | 181 | 193 | 3.8e-11 | 41.8 | 0.0067 | 12.0 | 6.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_167824.1_64642.t1 | gi|260832368|ref|XP_002611129.1| | hypothetical protein BRAFLDRAFT_88472 [Branchiostoma floridae] | 2.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_167824.1_64642.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_167824.1_64642.t1 ccaatatttcagaagatgataatgttctgaagggaataagcctgtcccataacgaaataagcagccttcaaccggagtca ttcggaaacctaaataacttgcaagtgttggatctctcatttaataagatacaaggatccatgcttcttaacgaaaacag cattgaagtccttaaagttacgaaactgcaaaatttgagctttcgaggaaatccgattggggcgcttaaaagaatgactt ttacttccttttcctattttatgttggaatatctagacttatccttgtgctctataaagagtctagagaacgactttatt cttaaccttcctagtctaaagagactcaatttaagtcataattacttagaagaatacaaatccgaattcgtagaaacaat gtcagagttaagtacccttgatttaagtttcaacagaattaatgtcctccacgaatttcctctgacacttaacttaaaag aaatatatctacagaacaataagatatctgctatagataacaatgcgtttgtttctgttcgaaaattgaaatacttgaat ctcgcaaataacgatttgagggagttgtcccccttaagtgtaccgtgggatactgcccagatgtcgctgcgaggaaatcc atggagatgtgactgccatatgagatggttgaaattaccaaataaggaaattgatgtgcaagcaatcaatgtttctatga tgtaa |
|
Protein
| Protein ID | pfu_aug1.0_167824.1_64642.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_167824.1_64642.t1 NISEDDNVLKGISLSHNEISSLQPESFGNLNNLQVLDLSFNKIQGSMLLNENSIEVLKVTKLQNLSFRGNPIGALKRMTF TSFSYFMLEYLDLSLCSIKSLENDFILNLPSLKRLNLSHNYLEEYKSEFVETMSELSTLDLSFNRINVLHEFPLTLNLKE IYLQNNKISAIDNNAFVSVRKLKYLNLANNDLRELSPLSVPWDTAQMSLRGNPWRCDCHMRWLKLPNKEIDVQAINVSMM |
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