Gene
| Gene Model ID | pfu_aug1.0_1680.1_22713 |
|---|---|
| Locus | scaffold1680.1 : 1 ... 24496 : + |
| To GenomeBrowser | scaffold1680.1:1..24496 |
| Genes list of scaffold | scaffold1680.1 |
| Synonym | pfu_aug2.0_228.1_27064 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1680.1_22713.t1 | 1 | 1 | SRPRB | 56 | 184 | 3.2e-06 | 26.4 | 2.0e-08 | 2.9e-05 | 23.3 |
| pfu_aug1.0_1680.1_22713.t1 | 1 | 1 | GTP_EFTU | 57 | 217 | 4.1e-40 | 137.2 | 3.20057e-42 | 4.8e-39 | 133.7 |
| pfu_aug1.0_1680.1_22713.t1 | 2 | 1 | MMR_HSR1 | 58 | 164 | 9.5e-08 | 32.0 | 3.9e-10 | 5.8e-07 | 29.4 |
| pfu_aug1.0_1680.1_22713.t1 | 1 | 1 | Miro | 58 | 166 | 3.8e-07 | 30.6 | 7.8e-10 | 1.2e-06 | 29.0 |
| pfu_aug1.0_1680.1_22713.t1 | 3 | 1 | GTP_EFTU_D2 | 244 | 305 | 1.3e-07 | 31.5 | 5.2e-09 | 7.8e-06 | 25.9 |
| pfu_aug1.0_1680.1_22713.t1 | 3 | 2 | GTP_EFTU_D2 | 368 | 381 | 1.3e-07 | 31.5 | 0.82 | 1200.0 | -0.4 |
| pfu_aug1.0_1680.1_22713.t1 | 1 | 1 | IF-2 | 381 | 474 | 4.4e-25 | 87.6 | 3.0e-28 | 4.4e-25 | 87.6 |
| pfu_aug1.0_1680.1_22713.t1 | 2 | 2 | MMR_HSR1 | 457 | 506 | 9.5e-08 | 32.0 | 0.63 | 940.0 | -0.3 |
| pfu_aug1.0_1680.1_22713.t1 | 3 | 3 | GTP_EFTU_D2 | 519 | 578 | 1.3e-07 | 31.5 | 0.0056 | 8.3 | 6.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1680.1_22713.t1 | gi|91087007|ref|XP_973971.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1680.1_22713.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1680.1_22713.t1 agttaagctccattgagcttattaaacaaatcagtaaatcatttggtgttaccatgtttacaatcagaagtagacctacg gctcaagagttaaaggaagaagagaaaagaattaaagacctaatcaaaccggaacctcctagcctagaggaaatggtcag ttgtccaccagtggtcactataatgggacatgttgaccatggaaaaacatctcttcttgatgctttaagaaagagtaata ttgttgataaggaatttggtggaattacacaacatataggagctttctcagtaagtctagccagtgggcatcagatcaca ttcttggacacacctggacatgcagccttctcatccatgcgagcccggggagctgtcgttacggatatcgtagtgttagt ggtagcggccgacgatggcataatgccacagactatagagtctatacaacatgccagaaaagcaggagttcctattgtag ttgcaataaataagattgatgtgccaaatgctgatatagatagagttataaagggcttaatggagcaaggagtaacatta gaagattatggtggtgatacacagtgggttccaatctctgctaaaaatgggactaacttacaagaactacaggagaagat agtaacgctagcggaggtgcttgatattaaatgtgatcctaatggcatggtggaggggtatatactagagtccaaacaag atcatgctagaggatctctagcgacagttttggttaaaagaggaacgttaaagaatggtaaaattattgtggctggtaca acctatgccaaggttaagggaatgcagaacgaacgaggtgaggcggtgaagaaagtcagtcctgcacatcccgtggaagt gttaggttggaaggaggttcccagtgctggggacgaggtcctggaagccagcacagagagaattgccaaagatgttgtag acttcagacttagtcagttacagagtaaaaaacaagaagaggatgcagagattataaaagtcaaacagatggaagacagg gaagtgtataacgaaaagagaaaacaaatgaaacatttagggaaaagaatattcagaaaatcatatgtgcgagtgaaaga gggtatcataggcaaagatatggagagcccaaatctgtccgtagtaattaaaggtgatgtgagtggctcaattgatgcca tcttgaacacattagccacatatgactcgcagaaatgccggcttgatataatggactttgatgtaggcaatataaccgaa gctgacatctctttagcacaagattttaacggtgcagtgttaggatttaacgtaactgcttccaaagaagtcttaaagaa agcagaggaagtaggagtctctgtaaaaatgaataatgtgatatacaaactttttgacgatgtaatagaaatgctgaatg aacgcctccctttgatagaggaagaggaaatagtcggtgaagcagaagttttaaaacccttctcagttgcagtaaacaaa tccaagcaagtcaatgtgggaggatgtgtatgtaataaaggaaccttgagaaaagatcttgattacagactagaacgtaa tggagaagtcctctttgaaggtaaactccaatcgttaaagcaccataaagaagaagttaatagtattagtgcagggactg aatgtggcattatattagacgatgaattcttcgagtataacactggtgatgtgataaagtgtataaaaacgaaacgcata gaacagcaaattgattggatgccgtcatttttacaagaatag |
|
Protein
| Protein ID | pfu_aug1.0_1680.1_22713.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1680.1_22713.t1 LSSIELIKQISKSFGVTMFTIRSRPTAQELKEEEKRIKDLIKPEPPSLEEMVSCPPVVTIMGHVDHGKTSLLDALRKSNI VDKEFGGITQHIGAFSVSLASGHQITFLDTPGHAAFSSMRARGAVVTDIVVLVVAADDGIMPQTIESIQHARKAGVPIVV AINKIDVPNADIDRVIKGLMEQGVTLEDYGGDTQWVPISAKNGTNLQELQEKIVTLAEVLDIKCDPNGMVEGYILESKQD HARGSLATVLVKRGTLKNGKIIVAGTTYAKVKGMQNERGEAVKKVSPAHPVEVLGWKEVPSAGDEVLEASTERIAKDVVD FRLSQLQSKKQEEDAEIIKVKQMEDREVYNEKRKQMKHLGKRIFRKSYVRVKEGIIGKDMESPNLSVVIKGDVSGSIDAI LNTLATYDSQKCRLDIMDFDVGNITEADISLAQDFNGAVLGFNVTASKEVLKKAEEVGVSVKMNNVIYKLFDDVIEMLNE RLPLIEEEEIVGEAEVLKPFSVAVNKSKQVNVGGCVCNKGTLRKDLDYRLERNGEVLFEGKLQSLKHHKEEVNSISAGTE CGIILDDEFFEYNTGDVIKCIKTKRIEQQIDWMPSFLQE |
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