Gene
| Gene Model ID | pfu_aug1.0_1680.1_22714 |
|---|---|
| Locus | scaffold1680.1 : 25710 ... 37065 : - |
| To GenomeBrowser | scaffold1680.1:25710..37065 |
| Genes list of scaffold | scaffold1680.1 |
| Synonym | pfu_aug2.0_228.1_27065 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1680.1_22714.t1 | 1 | 1 | AAA | 53 | 186 | 4.2039e-43 | 146.7 | 1.4013e-45 | 6.40393e-43 | 146.1 |
| pfu_aug1.0_1680.1_22714.t1 | 1 | 1 | AAA_22 | 53 | 160 | 7.6e-08 | 32.5 | 4.4e-08 | 2.0e-05 | 24.7 |
| pfu_aug1.0_1680.1_22714.t1 | 1 | 1 | AAA_2 | 53 | 146 | 2.1e-07 | 31.0 | 8.1e-10 | 3.6e-07 | 30.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1680.1_22714.t1 | gi|260836933|ref|XP_002613460.1| | hypothetical protein BRAFLDRAFT_119863 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 2 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1680.1_22714.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1680.1_22714.t1 atggtcactgtgatgaagttagagaaagctccacaagagacatacgctgatatcggtggtctggatcaacaaattcagga aattaaggaatctgtggagctgcctctcacccatcctgaatattatgaagagatgggaatcaaacctcctaaaggtgtca ttctgtatgggccacctggaacaggaaaaacattattagcaaaggctgtagccaaccaaacatcagccacattcctccga gttgttggctcagaactcattcaaaaatatttgggtgatggtcccaagcttgttcgagaattattcagggtcgctgagga gcatgcaccttcgattgtatttattgatgaaattgatgctattggtactaaaagatatgactcaaattcaggaggagaga gagaaatacaaaggactatgttagaacttcttaatcagctagatggtttcgactccagaggggatgtaaaggttgtgatg gcaacaaatcgtatagaaacactcgatcccgctcttatccgtcctggccgtatagataggaagatagaatttcctctccc cgacgagaaaaccaagcgaagaatcttcaccatacatacaagcaggatgaccctagccgatgacgtgaatatagatgatt atgtcatggcaaaggatgatttatcgggagctgatattaaggccatctgtacagaggcagggctcctagctctgagggag agaagaatgaaagtgactaacgatgactttaagtcagcaaaagacaatgttttgtatagaaagaatgagggaacgccgga gggtttatatttgtag |
|
Protein
| Protein ID | pfu_aug1.0_1680.1_22714.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1680.1_22714.t1 MVTVMKLEKAPQETYADIGGLDQQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR VVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVVM ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLADDVNIDDYVMAKDDLSGADIKAICTEAGLLALRE RRMKVTNDDFKSAKDNVLYRKNEGTPEGLYL |
|