Gene
| Gene Model ID | pfu_aug1.0_16812.1_18394 |
|---|---|
| Locus | scaffold16812.1 : 16386 ... 20937 : + |
| To GenomeBrowser | scaffold16812.1:16386..20937 |
| Genes list of scaffold | scaffold16812.1 |
| Synonym | pfu_aug2.0_4452.1_09326 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16812.1_18394.t1 | 1 | 1 | zf-RING_2 | 23 | 69 | 1.1e-09 | 37.9 | 8.3e-13 | 1.1e-09 | 37.9 |
| pfu_aug1.0_16812.1_18394.t1 | 2 | 1 | zf-C3HC4_3 | 23 | 73 | 2.6e-08 | 33.3 | 1.9e-11 | 2.6e-08 | 33.3 |
| pfu_aug1.0_16812.1_18394.t1 | 2 | 1 | zf-RING_UBOX | 24 | 66 | 2.2e-08 | 33.6 | 2.1e-11 | 2.8e-08 | 33.3 |
| pfu_aug1.0_16812.1_18394.t1 | 1 | 1 | zf-C3HC4 | 24 | 68 | 2.5e-08 | 33.4 | 1.8e-11 | 2.5e-08 | 33.4 |
| pfu_aug1.0_16812.1_18394.t1 | 1 | 1 | zf-C3HC4_2 | 24 | 68 | 3.6e-08 | 33.2 | 2.7e-11 | 3.6e-08 | 33.2 |
| pfu_aug1.0_16812.1_18394.t1 | 1 | 1 | zf-C3HC4_4 | 24 | 68 | 5.3e-08 | 32.5 | 4.0e-11 | 5.3e-08 | 32.5 |
| pfu_aug1.0_16812.1_18394.t1 | 2 | 1 | zf-RING_5 | 24 | 70 | 2.7e-07 | 30.2 | 2.0e-10 | 2.7e-07 | 30.2 |
| pfu_aug1.0_16812.1_18394.t1 | 2 | 2 | zf-RING_UBOX | 65 | 71 | 2.2e-08 | 33.6 | 0.21 | 280.0 | 1.3 |
| pfu_aug1.0_16812.1_18394.t1 | 2 | 2 | zf-C3HC4_3 | 113 | 142 | 2.6e-08 | 33.3 | 0.14 | 190.0 | 1.8 |
| pfu_aug1.0_16812.1_18394.t1 | 2 | 2 | zf-RING_5 | 115 | 146 | 2.7e-07 | 30.2 | 0.34 | 460.0 | 0.6 |
Transcript
| Transcript ID | pfu_aug1.0_16812.1_18394.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16812.1_18394.t1 atggcgacagcaacgccctctgaagatgaaagtgaagaaaaatcttctacaaagagtactcggtacgtctgtcctatttg tctagaatcattgaagactcctcgttctcttccttgtctgcataccttttgtgaagattgtttacaaacttttattactg ctgctgccggtaaaaatcgagacgacgccgcatgtcccgtatgcagaaaacaaattgtggcacccgaaccgggattatct catgaaaaatgggcaaaatcgttcccactcaactattacttgtctacatcttttcagtcgacatattacgcacaatcaga cgtaacaaatgagatggaaaactgtcgattttgcgagaaatctagcaaaagtgtaccagctgaacactattgcaaaaatt gtgcaggggcaatttgtgaagcatgtaaaaacctgcaccaagtctttcctgctttgagtaaccatgccgttttgacttta gaatcttacaaaaagaatcctacgattccagaaatagatgaaatttgtcctctacaccccagtaaagctatagaagttta ctgcttggaccacagtacaatgtgctgcagtgtgtgcttcgctacaaaacatcgtcattgtaaagatgtgaaatccatag aagagtgtgctgaggatttgtcagaagatgttctcaaactcataactacaaagttggagtctttgttggaatcggttgaa gtggaaattaaagaaaaggaaaacataggtgaacaacggaggaaattcaaagaggacacagtggttaagatgacacaatg catagaagctgctaaaaagaaccttgacattctactgcaacagtttgaatctcacatagataggaagaactcttctgctg agtcacagctacaaaatatccttaaaatgttgcaagggatcaaaatatcagctataggagacaggcagatgttagagtct gctaacaagtatggatctaagacacaactctttgttgctttagaaaagatgaaaattcaattgggtgaacagatgaaaca aatatcagatgttgcaaatgtatccctcacaggagcttacacaattgattttgataaagttgaaggaatatgtaacctta aaagtctgagtactgtcgaaacatgtacgtcctctagctctatggtagctttgacaacgcttaatgaactaaatgctata acgaatgctccaattatctttccgggacaacgtcttctcggcattgaaccacgcatgatcaattgggttgaaaaatgtac taatcgtttacaaggtacttgtcctggagcaacatttttaggtagaagaatagctataattgcaaaaggtagaaaggaaa tagtcgtcttgaaggaaaatggtagcattcattttcagcacaagataccgtacagtggagtacctgccgacataaatagc agaggggatgataaaagagtacacatctcatttcgaggggaccggattttgaaaggatattatatagataaaacaacgat aactgaactcgaacagatatcactgcagcacgttgctgaaggattttgcatctttgatgataagatagtacacgcttcaa aagactatgtctacatttctggaacagatggacaactcagacaattaattccaaatgatcatcggaaactggacggagga aatgagacaaaaacacctctgtcgcacaacactaagaatcctcgaggcattggtattgattttcagggaaatgtgtatgt gtgctgctacgattcttcaaataaacttatccgaatttctcacaaagataagtacgtcgatgttgcattaaatgtgaaat gttacactatttctttccatccagacggaatgtcattcgttctcatagattttgatggcaacgtgagagtttatgcaatt gattga |
|
Protein
| Protein ID | pfu_aug1.0_16812.1_18394.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16812.1_18394.t1 MATATPSEDESEEKSSTKSTRYVCPICLESLKTPRSLPCLHTFCEDCLQTFITAAAGKNRDDAACPVCRKQIVAPEPGLS HEKWAKSFPLNYYLSTSFQSTYYAQSDVTNEMENCRFCEKSSKSVPAEHYCKNCAGAICEACKNLHQVFPALSNHAVLTL ESYKKNPTIPEIDEICPLHPSKAIEVYCLDHSTMCCSVCFATKHRHCKDVKSIEECAEDLSEDVLKLITTKLESLLESVE VEIKEKENIGEQRRKFKEDTVVKMTQCIEAAKKNLDILLQQFESHIDRKNSSAESQLQNILKMLQGIKISAIGDRQMLES ANKYGSKTQLFVALEKMKIQLGEQMKQISDVANVSLTGAYTIDFDKVEGICNLKSLSTVETCTSSSSMVALTTLNELNAI TNAPIIFPGQRLLGIEPRMINWVEKCTNRLQGTCPGATFLGRRIAIIAKGRKEIVVLKENGSIHFQHKIPYSGVPADINS RGDDKRVHISFRGDRILKGYYIDKTTITELEQISLQHVAEGFCIFDDKIVHASKDYVYISGTDGQLRQLIPNDHRKLDGG NETKTPLSHNTKNPRGIGIDFQGNVYVCCYDSSNKLIRISHKDKYVDVALNVKCYTISFHPDGMSFVLIDFDGNVRVYAI D |
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