Gene
| Gene Model ID | pfu_aug1.0_16816.1_54344 |
|---|---|
| Locus | scaffold16816.1 : 2662 ... 11917 : - |
| To GenomeBrowser | scaffold16816.1:2662..11917 |
| Genes list of scaffold | scaffold16816.1 |
| Synonym | pfu_aug2.0_1770.1_01821 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Pax-2/5/8 |
| Description | BLAST best hits to NCBI NM_001032480.1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16816.1_54344.t1 | 1 | 1 | PAX | 1 | 52 | 5.5e-18 | 64.8 | 5.6e-22 | 8.3e-18 | 64.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16816.1_54344.t1 | gi|334313412|ref|XP_001377012.2| | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug1.0_16816.1_54344.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16816.1_54344.t1 caagttgctaccccgtatgtcattaagaggattatcgacataaagcgtcaaaatccagccagcttcgcctgggaaatccg agaccaattgattgccacaggaatttgcgatgaacacactattccatctgtaagctcgatcaacagaattctgagaaatg ccgcctctttttctgaaacatacgacttgcccactgatccagtacctttgagtcacgtgacacaagtgcactctactttt ccaagacttccggtgatgatgacgtcacttcctcattcttcaccaattactgatcgttttccatcgtctatccccgggtt atcctatcccaaaatggttgaacagctcgaacctgaagatgaaataaaaacatcgttggaaaattcgggcgaaaagaaag tgtgtgactgtctcgtgagtttactggaaaatcagctgctgtgtgatgactttcagaaagacacctttaaagatattaaa gatgctttacaggtgtatgacttctttctgtattacgagcactggttaacaaatggtggagaaaattttcggaagattaa aacatgttaa |
|
Protein
| Protein ID | pfu_aug1.0_16816.1_54344.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16816.1_54344.t1 QVATPYVIKRIIDIKRQNPASFAWEIRDQLIATGICDEHTIPSVSSINRILRNAASFSETYDLPTDPVPLSHVTQVHSTF PRLPVMMTSLPHSSPITDRFPSSIPGLSYPKMVEQLEPEDEIKTSLENSGEKKVCDCLVSLLENQLLCDDFQKDTFKDIK DALQVYDFFLYYEHWLTNGGENFRKIKTC |
|