Gene
| Gene Model ID | pfu_aug1.0_1685.1_37080 |
|---|---|
| Locus | scaffold1685.1 : 18149 ... 21735 : - |
| To GenomeBrowser | scaffold1685.1:18149..21735 |
| Genes list of scaffold | scaffold1685.1 |
| Synonym | pfu_aug2.0_448.1_27411 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1685.1_37080.t1 | 3 | 1 | Rad60-SLD | 41 | 96 | 4.1e-07 | 29.5 | 0.0021 | 6.2 | 6.5 |
| pfu_aug1.0_1685.1_37080.t1 | 2 | 1 | ubiquitin | 46 | 102 | 6.1e-15 | 54.3 | 1.2e-07 | 0.00035 | 19.9 |
| pfu_aug1.0_1685.1_37080.t1 | 2 | 1 | Ubiquitin_2 | 49 | 80 | 1.2e-10 | 41.4 | 1.8e-06 | 0.0052 | 17.0 |
| pfu_aug1.0_1685.1_37080.t1 | 3 | 2 | Rad60-SLD | 114 | 180 | 4.1e-07 | 29.5 | 1.4e-07 | 0.00042 | 19.9 |
| pfu_aug1.0_1685.1_37080.t1 | 2 | 2 | Ubiquitin_2 | 115 | 158 | 1.2e-10 | 41.4 | 4.6e-08 | 0.00014 | 22.0 |
| pfu_aug1.0_1685.1_37080.t1 | 2 | 2 | ubiquitin | 119 | 185 | 6.1e-15 | 54.3 | 9.5e-12 | 2.8e-08 | 33.0 |
| pfu_aug1.0_1685.1_37080.t1 | 1 | 1 | TerD | 209 | 359 | 1.4e-09 | 37.5 | 1.0e-12 | 3.0e-09 | 36.4 |
| pfu_aug1.0_1685.1_37080.t1 | 3 | 3 | Rad60-SLD | 324 | 343 | 4.1e-07 | 29.5 | 0.62 | 1900.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1685.1_37080.t1 | gi|156374428|ref|XP_001629809.1| | predicted protein [Nematostella vectensis] | 3.0e-35 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1685.1_37080.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1685.1_37080.t1 atgcaactgtattacgcaatcctagaatccatgtttggtaaggaggaacatgatgaggacaataatgacgccaaagactc cgagattgggcagttcaagtatttaactatcgcaacaataagcagagaacacgctgatgtagttataaagtacaacgaaa gttttacagttataaatctgaaagataaactttattccaagtttggtgaggagcacgctcgacagaaactttactacggt gaaacagaactcgaggtagggtacaaactagttgattacaatattccaaatcatggcacggttaccttggatgccggtga agataatggacgattcaagaacgtaaccataaccacccttcagggagaaagcatgaccatcaagtatgatgaacatttta caatcagcaatttaaaagaaaggctgtatgacgaatttggtcaggaacctgtgaaacaaaaattactctttggtgataca gaacttaaggaaggcaatggaaacctagttgattatgaaattccgaaccacgctacgatataccttatcgttcagctgta cggtgttacaggcgccattcatgcagctgtgttcgatctttcgtgggaatatccgaaaggtttcctcaggagacaaggca taaacatccccgtcctcacaaatcgtattgacaggaagcacgtagatgccagttgttttcttctgtctggagaattcatt gaagagatcgtcgatcacaagcacaccaaatccaaatttagccgctgtgtcgttcattcaaagagtatgctaacagacga ccaacgtaaaggacaccagaatattgatgtgagattccaagacattccggagaacattacatccgttttctttgccctta gtgcaagagacaaaagctctattagcaaattccccaatcccagcctgcaattctatgaacaaattagaatgaccaatgtt ttgtgtgaaacaactatcccaactgacacaaaatgtagggcaattatcatgtgctacatgacccgaagcacatctgagga caacagttgggaaatctacaaatgtggcaagccctcagatggaaatgacagtgattataccaagttacgtgaagatatca aagacattatacgacaatttacgaaatga |
|
Protein
| Protein ID | pfu_aug1.0_1685.1_37080.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1685.1_37080.t1 MQLYYAILESMFGKEEHDEDNNDAKDSEIGQFKYLTIATISREHADVVIKYNESFTVINLKDKLYSKFGEEHARQKLYYG ETELEVGYKLVDYNIPNHGTVTLDAGEDNGRFKNVTITTLQGESMTIKYDEHFTISNLKERLYDEFGQEPVKQKLLFGDT ELKEGNGNLVDYEIPNHATIYLIVQLYGVTGAIHAAVFDLSWEYPKGFLRRQGINIPVLTNRIDRKHVDASCFLLSGEFI EEIVDHKHTKSKFSRCVVHSKSMLTDDQRKGHQNIDVRFQDIPENITSVFFALSARDKSSISKFPNPSLQFYEQIRMTNV LCETTIPTDTKCRAIIMCYMTRSTSEDNSWEIYKCGKPSDGNDSDYTKLREDIKDIIRQFTK |
|