Gene
| Gene Model ID | pfu_aug1.0_16858.1_54348 |
|---|---|
| Locus | scaffold16858.1 : 1416 ... 11905 : + |
| To GenomeBrowser | scaffold16858.1:1416..11905 |
| Genes list of scaffold | scaffold16858.1 |
| Synonym | pfu_aug2.0_12517.1_26433 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16858.1_54348.t1 | 1 | 1 | SH3_9 | 12 | 50 | 4.6e-07 | 29.3 | 4.8e-10 | 1.0e-06 | 28.2 |
| pfu_aug1.0_16858.1_54348.t1 | 2 | 1 | SH3_1 | 12 | 46 | 3.1e-06 | 26.4 | 5.6e-09 | 1.2e-05 | 24.6 |
| pfu_aug1.0_16858.1_54348.t1 | 1 | 1 | SH3_3 | 16 | 49 | 3.1e-06 | 27.2 | 3.1e-09 | 6.6e-06 | 26.2 |
| pfu_aug1.0_16858.1_54348.t1 | 2 | 2 | SH3_1 | 73 | 89 | 3.1e-06 | 26.4 | 0.34 | 730.0 | -0.4 |
| pfu_aug1.0_16858.1_54348.t1 | 1 | 1 | Pkinase | 83 | 149 | 4.5e-11 | 42.3 | 3.0e-14 | 6.3e-11 | 41.9 |
| pfu_aug1.0_16858.1_54348.t1 | 2 | 1 | Pkinase_Tyr | 84 | 139 | 1.6e-13 | 50.3 | 8.0e-15 | 1.7e-11 | 43.6 |
| pfu_aug1.0_16858.1_54348.t1 | 2 | 2 | Pkinase_Tyr | 139 | 156 | 1.6e-13 | 50.3 | 0.0022 | 4.8 | 6.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16858.1_54348.t1 | gi|193662043|ref|XP_001949462.1| | PREDICTED: tyrosine-protein kinase Abl isoform X1 [Acyrthosiphon pisum] | 2.0e-23 |
Transcript
| Transcript ID | pfu_aug1.0_16858.1_54348.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16858.1_54348.t1 atgcctcaaattctgctacatctttctatcaacttgcactttgttgaaggggaacaagtcaccatcttgggctataacaa aggaggggagtggtgtgaggtaaagaacaaggcaggagacataggatgggtcccctccaactacatagcacctgtcaaca gntctcgacaagttctcctggtaccacggacagatttcccggaacgcatcagaatatctcctcagcagtggtataaacgg aagctttctggtggaggtcaatatggagatgtatacgaggcaatatggaaacgatacaacaagacagtagctgttaaaac actaaaggaagacactatggccttgaaagatttcctagaagaagcttgtattatgaaggaaatgaaacatccaaatctgg tacaactacttggttggcagtgggatcccaaggatcgaccaacatttaaagatatccacaattccctggagcatatgttt gaaaagacaagtattagtgatgaggtggagaaggaactagagaaaactgataagaagattccaattctgggaggatcgaa gaaaatacgagtccctcagcaaccagtaccaagcgtagagagccctgatcacattcctgatagcgggagaatgagtgcag gttccacacctatagctggtagaagagctttaccagggatggatgaccctgatgctacacttcggcaagtgtctaaagtg ctgtcaagcngtattctcttggactgttatagtcatgaagtctgtttctcaatatcaaaaacatatctcatccaatga |
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Protein
| Protein ID | pfu_aug1.0_16858.1_54348.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16858.1_54348.t1 MPQILLHLSINLHFVEGEQVTILGYNKGGEWCEVKNKAGDIGWVPSNYIAPVNXSRQVLLVPRTDFPERIRISPQQWYKR KLSGGGQYGDVYEAIWKRYNKTVAVKTLKEDTMALKDFLEEACIMKEMKHPNLVQLLGWQWDPKDRPTFKDIHNSLEHMF EKTSISDEVEKELEKTDKKIPILGGSKKIRVPQQPVPSVESPDHIPDSGRMSAGSTPIAGRRALPGMDDPDATLRQVSKV LSSXILLDCYSHEVCFSISKTYLIQ |
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