Gene
| Gene Model ID | pfu_aug1.0_16862.1_54351 |
|---|---|
| Locus | scaffold16862.1 : 1 ... 11887 : - |
| To GenomeBrowser | scaffold16862.1:1..11887 |
| Genes list of scaffold | scaffold16862.1 |
| Synonym | pfu_aug2.0_956.1_21296 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Pif like protein |
| Description | Pif like protein partial sequence, best hit to Blast BAK86420.1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16862.1_54351.t1 | 1 | 1 | VWA_2 | 6 | 173 | 1.3e-16 | 61.2 | 7.4e-20 | 1.8e-16 | 60.7 |
| pfu_aug1.0_16862.1_54351.t1 | 1 | 1 | VWA | 6 | 172 | 1.9e-31 | 109.1 | 1.1e-34 | 2.8e-31 | 108.6 |
| pfu_aug1.0_16862.1_54351.t1 | 3 | 1 | CBM_14 | 230 | 282 | 2.0e-11 | 43.6 | 9.1e-10 | 2.3e-06 | 27.4 |
| pfu_aug1.0_16862.1_54351.t1 | 3 | 2 | CBM_14 | 287 | 326 | 2.0e-11 | 43.6 | 3.9e-07 | 0.00097 | 19.0 |
| pfu_aug1.0_16862.1_54351.t1 | 3 | 3 | CBM_14 | 406 | 428 | 2.0e-11 | 43.6 | 0.0017 | 4.3 | 7.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| Dshape | 1 |
Transcript
| Transcript ID | pfu_aug1.0_16862.1_54351.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16862.1_54351.t1 gatgcagggacttgctggacgtaattgtagtggtggatggcagcgacagtattacatcaaaggattacgtcacactgaaa aactcattggtggacttgatggaccatctgacgttagccgaagaccaagctaggctaggagcagtactatacagcagtga cgtagccaatacactacctcttagtgccgaccgttcgtggcttaggaagtcactccttagtctccggcaccctagggatg gcactcgaacagatttaggaattaaagccatgcgtgagatgttcaaaacccaaggtcgaccggacgtacccagggtggga gtcgttgtcacagatggtatgtcaaaagatccaactcaaactgcgcgtcaagcaaaactggcacgagatgagggtgttcg actttatgcagttggtgtttcacgcttcattgacgaggatgagttactctctattgcttcaaatggaacaacagtctact cagcatccagtttcgatcaactgaagctcgtgttcgaatcattggttgtgcaggtttgtccaacaacaacgactaccaca actacaactacaacaacgactactaccacaccagctccaaccactaccaccactactactaccaccacaaccgtaccaac taccacacctaaacctaaaaacccatgtgatcaatgcaaaatgtccaatggtgcaggatttactcggcatccaacagatt gcgataagttcgtacagtgctactttggaaacaacgggctgaagaagatggtatttcaacaatgtccatggggcaatttc tgggagcagagttcattgacgtgcaagcccgcccacagggtccagtgcccaacggataaatgtcgtgatccggaagtgct tacatatgaccttcccggaagttgtcgatctttctgggcatgcgatcaaggtgattcaattccaatgtgctgccccgagg ggaccatgtatgcagagggaatcggctgcttgcctgatgaaaactgcaaagatccttgtccgcctaggccctcgggatat cagtccccgaggacgaaaaagaagttattatcccagctgagcaaagataagaaagaagcagtccttaaatctcttggagc tccagtttctccgagtaaagtgattccgaaagtctgtgacaagaagccagtctttgacgatccgagtcattttgaacagt ttgtggacagatttggatgggtcaaaatgccttgtgccccaggaacagcttacgataccaaggattgtgaatgcaccgtg agagccaaatacactgcaactaaagaacaaagtatgtcttggataatattgttttcttga |
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Protein
| Protein ID | pfu_aug1.0_16862.1_54351.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16862.1_54351.t1 CRDLLDVIVVVDGSDSITSKDYVTLKNSLVDLMDHLTLAEDQARLGAVLYSSDVANTLPLSADRSWLRKSLLSLRHPRDG TRTDLGIKAMREMFKTQGRPDVPRVGVVVTDGMSKDPTQTARQAKLARDEGVRLYAVGVSRFIDEDELLSIASNGTTVYS ASSFDQLKLVFESLVVQVCPTTTTTTTTTTTTTTTTPAPTTTTTTTTTTTVPTTTPKPKNPCDQCKMSNGAGFTRHPTDC DKFVQCYFGNNGLKKMVFQQCPWGNFWEQSSLTCKPAHRVQCPTDKCRDPEVLTYDLPGSCRSFWACDQGDSIPMCCPEG TMYAEGIGCLPDENCKDPCPPRPSGYQSPRTKKKLLSQLSKDKKEAVLKSLGAPVSPSKVIPKVCDKKPVFDDPSHFEQF VDRFGWVKMPCAPGTAYDTKDCECTVRAKYTATKEQSMSWIILFS |
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