Gene
| Gene Model ID | pfu_aug1.0_16920.1_69024 |
|---|---|
| Locus | scaffold16920.1 : 2506 ... 8337 : + |
| To GenomeBrowser | scaffold16920.1:2506..8337 |
| Genes list of scaffold | scaffold16920.1 |
| Synonym | pfu_aug2.0_105.1_16928 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_16920.1_69024.t1 | 1 | 1 | RGM_C | 13 | 177 | 0.0 | 185.4 | 0.0 | 0.0 | 185.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_16920.1_69024.t1 | gi|260814672|ref|XP_002602038.1| | hypothetical protein BRAFLDRAFT_82627 [Branchiostoma floridae] | 5.0e-40 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_16920.1_69024.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16920.1_69024.t1 atgataaagaagaatgtggattgtgcggccaatgaattcaagacgtacatggcccagacggatcatctgccgggaacatt ctctgacggtatgacacactacggtcctgatagaagtgtgtatcttcgcgtgctcgaacccggcaaaaatatcgagatct acttccggtatattgataccacaatacgggttcggcagattggacggtatttcacattcgccatcaaaatgccggaaagt attgtggatgagtccaggaaactggacgaagaacaactctgtattcagggctgtccaaaacgagaaaggattgactatca aagattcttagccgagaaacgcaaagtagcgctagaaaaacatggcagtatcaaaatgacacgagaggaagcaagtgatt tgtgccgtaaagaaaaagtggtggatttttatttcgactcgtgtgtgtttgaccttatgacaacgggggacacgaatttt acaatggcagcctaccaggcttggcaggatttaattattttgtcccccgaatttgttccacgtcatcaaaacaggacaga tttcaaaaagtacgatgacgaaatccacagtggtagcagacggactacccaaagtgaatatttttggattatagtattat cagtgcttatttgtgtatatttccgacatacggattcataa |
|
Protein
| Protein ID | pfu_aug1.0_16920.1_69024.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_16920.1_69024.t1 MIKKNVDCAANEFKTYMAQTDHLPGTFSDGMTHYGPDRSVYLRVLEPGKNIEIYFRYIDTTIRVRQIGRYFTFAIKMPES IVDESRKLDEEQLCIQGCPKRERIDYQRFLAEKRKVALEKHGSIKMTREEASDLCRKEKVVDFYFDSCVFDLMTTGDTNF TMAAYQAWQDLIILSPEFVPRHQNRTDFKKYDDEIHSGSRRTTQSEYFWIIVLSVLICVYFRHTDS |
|