Gene
| Gene Model ID | pfu_aug1.0_17.1_14695 |
|---|---|
| Locus | scaffold17.1 : 84248 ... 93565 : - |
| To GenomeBrowser | scaffold17.1:84248..93565 |
| Genes list of scaffold | scaffold17.1 |
| Synonym | pfu_aug2.0_524.1_14259 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_17.1_14695.t1 | 5 | 1 | WD40 | 28 | 45 | 2.5e-10 | 39.8 | 0.0013 | 19.0 | 5.2 |
| pfu_aug1.0_17.1_14695.t1 | 5 | 2 | WD40 | 67 | 96 | 2.5e-10 | 39.8 | 5.3e-10 | 7.9e-06 | 25.5 |
| pfu_aug1.0_17.1_14695.t1 | 5 | 3 | WD40 | 133 | 159 | 2.5e-10 | 39.8 | 0.13 | 2000.0 | -1.1 |
| pfu_aug1.0_17.1_14695.t1 | 5 | 4 | WD40 | 173 | 196 | 2.5e-10 | 39.8 | 0.005 | 74.0 | 3.4 |
| pfu_aug1.0_17.1_14695.t1 | 5 | 5 | WD40 | 219 | 228 | 2.5e-10 | 39.8 | 0.54 | 8000.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_17.1_14695.t1 | gi|241632459|ref|XP_002408602.1| | WD-repeat protein, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_17.1_14695.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17.1_14695.t1 atggatgtaacgactggacgccagcttcacatcccgtccctgaatagtagcagtgatagtcagcctgcagactgtccttg tggtatacatagtatcgccctcaatccctcacgttctctatttgctaccggagcagagcatactaacgatttagcagtct atatgcttcctacttttgatcctgtcatggtcggagagggagggcatacagactggattttcgatatgcagtggatagat gatgaattcattgttacaggatctagggacagtaaacttgcattatggcgtgtagacgaggagatttgtgatgttcagaa gtcagatattaccaagtctatgcctgattataccgttaggaagcctgagatttcaacaatgtgcgagaaagctcagaaag tcagagcactctcttacaatgatgagaggaaggaacttgccgtgctgtcattaaatgcatattttcatttatgggatgtg gaaactttcacagcaaaaagctgcaggaaattattccataccagagaaaatgtgtgcatggctttgtcgaaggagaagtg tctgtttgctataggttcacaatctcatataaacctggtggatccgagatcccctaatactttaaccaccatcatctcta agtacagaggacaaggtgtgaggtctgtgacgtttcgtgataacatcctcactataggcactggagttggtgttatattg ttctttgacatcaatgccgaaaatttggaaaccgccaacatagcgaatataaaaccaccgcaatcatttccccgttttca gtattaa |
|
Protein
| Protein ID | pfu_aug1.0_17.1_14695.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17.1_14695.t1 MDVTTGRQLHIPSLNSSSDSQPADCPCGIHSIALNPSRSLFATGAEHTNDLAVYMLPTFDPVMVGEGGHTDWIFDMQWID DEFIVTGSRDSKLALWRVDEEICDVQKSDITKSMPDYTVRKPEISTMCEKAQKVRALSYNDERKELAVLSLNAYFHLWDV ETFTAKSCRKLFHTRENVCMALSKEKCLFAIGSQSHINLVDPRSPNTLTTIISKYRGQGVRSVTFRDNILTIGTGVGVIL FFDINAENLETANIANIKPPQSFPRFQY |
|