Gene
| Gene Model ID | pfu_aug1.0_170.1_36339 |
|---|---|
| Locus | scaffold170.1 : 92706 ... 100395 : - |
| To GenomeBrowser | scaffold170.1:92706..100395 |
| Genes list of scaffold | scaffold170.1 |
| Synonym | pfu_aug2.0_363.1_10669 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Pif like protein |
| Description | Pif like protein, best hit to BAK86420.1 (BMSP) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_170.1_36339.t1 | 1 | 1 | VWA | 1 | 129 | 3.1e-18 | 66.1 | 9.0e-22 | 4.5e-18 | 65.5 |
| pfu_aug1.0_170.1_36339.t1 | 1 | 1 | VWA_2 | 1 | 117 | 1.2e-09 | 38.5 | 3.2e-13 | 1.6e-09 | 38.1 |
| pfu_aug1.0_170.1_36339.t1 | 3 | 1 | CBM_14 | 170 | 222 | 5.6e-09 | 35.8 | 7.2e-11 | 3.6e-07 | 30.0 |
| pfu_aug1.0_170.1_36339.t1 | 3 | 2 | CBM_14 | 235 | 279 | 5.6e-09 | 35.8 | 3.9e-06 | 0.019 | 14.8 |
| pfu_aug1.0_170.1_36339.t1 | 3 | 3 | CBM_14 | 313 | 331 | 5.6e-09 | 35.8 | 0.096 | 470.0 | 0.8 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_170.1_36339.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_170.1_36339.t1 atgggtatagttgtctacagcagcaaaattgctcgaaaagtgccgcttacgtcagacaaatggactcttcaaaaggaagc tgagaagttacctcatccaagggacggtaccaatactgcactcggaatagaaactatgaaagaactcttcaaagcaagcc ccagaccaggagttccgaaggtcggaattgtagtaacagatggaatatctaagaacacgaccgagacagtgatacaagca aatctaaccaaagatctaggaatcaacatgttctctgttggcgtctctcaactcattgatatgccagaactgatcggcat tgcgtcgtctgaacgccaagttctcacagttgattcatttgacgcattggcaaggaatatcgaagaactagttctgttgg tttgtccaacgaccccggttccaacgacaacaatgaaacccgcccctactcccccacccacacaggcaccaatctctggt ccgtgtgataaatgtaaaatgcaaaatggagtcggttataacccacatccggatgactgtgacaagtttacacagtgcta ctttggaggggaaaatcaaataatggctgtttacaggcagtgtccttttggtcagtactgggatcaaggaatgctgacct gccgaccatccgcggaagtcaattgtcccaatgataaatgccgccatcccagattactctcctacccatacgaaggtact acaagctgtcgggcgtactggaaatgtaactttggcaaagccattggtatgtgctgcccggaaggatacgagtacaacgc gtttggcggatgcgtaaagagtaagaagtgcaacgatacgtgtccacctcaactgatcaacgagggaccatgcgacaagc ggccatcgtggaaaaacgaaaaaggattcgagcagtatgtgtatggttttggatgggtagatatgccatgtgctccggga agtcgattcgattgcaacacgtgtgaatgttcattgcatacatcatttctcccagggcgagtttgcagaccggaagtcca tataccgttcgacaaaaactgtaaagatgaatccggaaaagctgtttacgtggagaacattgacgtcactttgaccggaa ctggtttaggatacttcaacgggaacacatccaagctcataatcccaagattcgccaatgtggagcactactcggacttc gtgattaagatgagattcatggacgtgactggtggtgttaggggaatggtcagtaatggcgattgttgctccaacgaagc ctccttgaagatggtcaaaagtgaacggaacattcattacttagctaagtgcagccgcggagctacctcaacattctacc tgccctttatacctggaaattggaacgaagcatactatatgcacgacacaaagaagctagaaggcaaagtaaatggaata gggatggagaaatgggcctacggttctttacggagatctgtatatggtccattaaagaaatctgctgccggacttcagat tggatttgtcaaaggatttgagaacttccacgggtatatggactacgttactatatacatgtgtcgtcctacacatctta gataa |
|
Protein
| Protein ID | pfu_aug1.0_170.1_36339.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_170.1_36339.t1 MGIVVYSSKIARKVPLTSDKWTLQKEAEKLPHPRDGTNTALGIETMKELFKASPRPGVPKVGIVVTDGISKNTTETVIQA NLTKDLGINMFSVGVSQLIDMPELIGIASSERQVLTVDSFDALARNIEELVLLVCPTTPVPTTTMKPAPTPPPTQAPISG PCDKCKMQNGVGYNPHPDDCDKFTQCYFGGENQIMAVYRQCPFGQYWDQGMLTCRPSAEVNCPNDKCRHPRLLSYPYEGT TSCRAYWKCNFGKAIGMCCPEGYEYNAFGGCVKSKKCNDTCPPQLINEGPCDKRPSWKNEKGFEQYVYGFGWVDMPCAPG SRFDCNTCECSLHTSFLPGRVCRPEVHIPFDKNCKDESGKAVYVENIDVTLTGTGLGYFNGNTSKLIIPRFANVEHYSDF VIKMRFMDVTGGVRGMVSNGDCCSNEASLKMVKSERNIHYLAKCSRGATSTFYLPFIPGNWNEAYYMHDTKKLEGKVNGI GMEKWAYGSLRRSVYGPLKKSAAGLQIGFVKGFENFHGYMDYVTIYMCRPTHLR |
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