Gene
| Gene Model ID | pfu_aug1.0_17024.1_39892 |
|---|---|
| Locus | scaffold17024.1 : 15416 ... 26090 : + |
| To GenomeBrowser | scaffold17024.1:15416..26090 |
| Genes list of scaffold | scaffold17024.1 |
| Synonym | pfu_aug2.0_2150.1_02009 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_17024.1_39892.t1 | 1 | 1 | DUF1794 | 34 | 183 | 1.20512e-43 | 148.6 | 0.0 | 1.4013e-43 | 148.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_17024.1_39892.t1 | gi|260795877|ref|XP_002592931.1| | hypothetical protein BRAFLDRAFT_65518 [Branchiostoma floridae] | 3.00018e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_17024.1_39892.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17024.1_39892.t1 atgaggaattcaggtgtaaacctgttaaaatctgtcttatttagattaaggacaaatactgtaaagaatatgtcatcggg cccgccgatacatgacgtcatcaagcctgtagcatggttaattggaaaatggaaaggagatggtgaaggaaagtacccca ctatggatgatttcacgtacagggaggagatagaatttttccattttggaaaacctatgcttcagtttaatgcctactct actgatatggaaggaaaaccgcttcatcgagagataggtttcctaaggataaagaaaggcacatcgcatgttgcactgat cgtagcacacaataacggtgtgagtgatatggaagagggagaagtgaatggtcaagaaatcaagttggaatcccatacat tgggtagaatgactttcggcaaaccgccacaaaccaagaagctttgcagaacaataaaactagaaggagataccctgtct caggtcctacacatggaaacagagaatacatcactgacggaacatttacgtgcaacatacaaaaaggtcacgtga |
|
Protein
| Protein ID | pfu_aug1.0_17024.1_39892.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17024.1_39892.t1 MRNSGVNLLKSVLFRLRTNTVKNMSSGPPIHDVIKPVAWLIGKWKGDGEGKYPTMDDFTYREEIEFFHFGKPMLQFNAYS TDMEGKPLHREIGFLRIKKGTSHVALIVAHNNGVSDMEEGEVNGQEIKLESHTLGRMTFGKPPQTKKLCRTIKLEGDTLS QVLHMETENTSLTEHLRATYKKVT |
|