Gene
| Gene Model ID | pfu_aug1.0_1723.1_37096 |
|---|---|
| Locus | scaffold1723.1 : 31863 ... 33815 : - |
| To GenomeBrowser | scaffold1723.1:31863..33815 |
| Genes list of scaffold | scaffold1723.1 |
| Synonym | pfu_aug2.0_4636.1_22585 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | actin |
| Description | Actin partial sequence. BLASTP top hit to GU645236(Penaeus japonicus). The amino acid sequence lacks the N-terminal region of 82 amino acids compared with ohter actin sequences. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1723.1_37096.t1 | 1 | 1 | Actin | 1 | 294 | 0.0 | 389.0 | 0.0 | 0.0 | 388.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1723.1_37096.t1 | gi|295849220|gb|ADG45298.1| | actin [Marsupenaeus japonicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_1723.1_37096.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1723.1_37096.t1 atggaggctatctggtttcataccttctacaatgaactacatgtagcccccgaggaacaccctattctcctgactgagac tccattcaaccgaaagtttgacagagaaaagatgacagagatcatatttgaaaccttcaactgtcctgccatgtacgtag ctatccaacccgtgatgtcactgcacgcgtctggtctttctacaggtatcgtactggaatcaggggatggcgtatcacac acagtacccatctatgagggatattctcttccccacgccgtcaagagattagacttcgccggacgtgacctcacagatta tctctcaaggatccttatggagcgtggatactcattcacatccacatctgagagggaaatcgtcagagacattaaggaaa aattatgttatgttgccttggactttgaacaagaaatgactaaagccgcgtcatcatcatctgtagagaggagttacgaa cttcccgacggtcaggtcatcaccattggtaacgaaaggttcagggtacctgaggccatttttcagccatcttacctacc atcagaatcaagtggaattcatgagatcacgtgcgacagtatcatgagatgtgacgtagatattcgtaaagacttgtacg caaacattattttatctggcggttttaccatgtattcaggcatcgctgaccgtatgcagaaagaaatcacatctcttgct ccatcaacaatgaaaatcaatgtcatagctccaccagagaggaaatactcggtgtgggttggtgggtctatccttgcttc tctctccaccttccagcagatgtggatcagcaaagaggaatacggcaactacggtcaatccatcgtccataagaagtgct tctga |
|
Protein
| Protein ID | pfu_aug1.0_1723.1_37096.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1723.1_37096.t1 MEAIWFHTFYNELHVAPEEHPILLTETPFNRKFDREKMTEIIFETFNCPAMYVAIQPVMSLHASGLSTGIVLESGDGVSH TVPIYEGYSLPHAVKRLDFAGRDLTDYLSRILMERGYSFTSTSEREIVRDIKEKLCYVALDFEQEMTKAASSSSVERSYE LPDGQVITIGNERFRVPEAIFQPSYLPSESSGIHEITCDSIMRCDVDIRKDLYANIILSGGFTMYSGIADRMQKEITSLA PSTMKINVIAPPERKYSVWVGGSILASLSTFQQMWISKEEYGNYGQSIVHKKCF |
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