Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_1726.1_29828
Locus scaffold1726.1 : 83121 ... 87055 : -
To GenomeBrowser scaffold1726.1:83121..87055
Genes list of scaffold scaffold1726.1
Synonym pfu_aug2.0_5.1_16690

Manual annotation
Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_1726.1_29828.t1 gi|291235830|ref|XP_002737834.1| PREDICTED: probable protein BRICK1-B-like [Saccoglossus kowalevskii] 1.0e-27

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-4cell 1
8-16cell 1
egg-Dshape 1
trochophore 1
>Adult tissues
Dshape 1
mantle 1

Transcript
Transcript IDpfu_aug1.0_1726.1_29828.t1
Definition-
>pfu_aug1.0_1726.1_29828.t1
atgtcacatccacaaagtggtggacaaatgcatcaaaggcccatccagcaggactgggcaaacagagaatatgtagaggt
catcacaggcagcatcaagaaaatctcagacttcctcaattcatttgatacctcatgtagatctcgacttgcaactttga
atgagaaacttactcagttggaaagaagagttgaatatattgaggcaagggtaacaaaaggtgaaacattaacatga

Protein
Protein IDpfu_aug1.0_1726.1_29828.t1
Definition-
>pfu_aug1.0_1726.1_29828.t1
MSHPQSGGQMHQRPIQQDWANREYVEVITGSIKKISDFLNSFDTSCRSRLATLNEKLTQLERRVEYIEARVTKGETLT

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