Gene
Gene Model ID | pfu_aug1.0_17318.1_69071 |
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Locus | scaffold17318.1 : 1 ... 7619 : + |
To GenomeBrowser | scaffold17318.1:1..7619 |
Genes list of scaffold | scaffold17318.1 |
Synonym | pfu_aug2.0_3950.1_02527 |
Manual annotation
Study field | Biomineralization |
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Gene name | MAPKK |
Description | BLAST best hit to Dual specificity mitogen-activated protein kinase kinase 4 [Salmo salar] |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_17318.1_69071.t1 | 1 | 1 | Pkinase | 1 | 136 | 3.1e-28 | 98.6 | 7.7e-32 | 3.8e-28 | 98.3 |
pfu_aug1.0_17318.1_69071.t1 | 1 | 1 | Pkinase_Tyr | 4 | 135 | 2.0e-20 | 72.9 | 4.8e-24 | 2.4e-20 | 72.7 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_17318.1_69071.t1 | gi|213515200|ref|NP_001135384.1| | Dual specificity mitogen-activated protein kinase kinase 4 [Salmo salar] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_17318.1_69071.t1 |
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Definition | - |
>pfu_aug1.0_17318.1_69071.t1 atgtgaagccatctaacatcctattagacagaaatggaaatataaagttatgtgattttggtattagcggtcagctagta gattcaatagccaagacaagagacgctgggtgtcgaccgtacatggctcctgaaagaatagatcctagggcgtccagtaa aggttatgatattagatctgatgtgtggagccttggtattacactaatggagttagctacaggtaaatttccatatccca agtggaacagtgtgtttgaccagttgacgcaggtcgtccaaggtccagcaccacagctcaaatccaccgagggacatttc tcagaggatttcctcaacttcctcaatacctgtttaacaaaagatgaaaagcaaaggccaaaatatgccaagctactgga tcatctgttcattaaaagatatgaagagatggaggtggatgtagccagttatgtgtgtactattttagaccatatacgtg atacaaatacaaacttacaagaattgactgcttccaattcatga |
Protein
Protein ID | pfu_aug1.0_17318.1_69071.t1 |
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Definition | - |
>pfu_aug1.0_17318.1_69071.t1 VKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPRASSKGYDIRSDVWSLGITLMELATGKFPYPK WNSVFDQLTQVVQGPAPQLKSTEGHFSEDFLNFLNTCLTKDEKQRPKYAKLLDHLFIKRYEEMEVDVASYVCTILDHIRD TNTNLQELTASNS |