Gene
| Gene Model ID | pfu_aug1.0_17318.1_69071 |
|---|---|
| Locus | scaffold17318.1 : 1 ... 7619 : + |
| To GenomeBrowser | scaffold17318.1:1..7619 |
| Genes list of scaffold | scaffold17318.1 |
| Synonym | pfu_aug2.0_3950.1_02527 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | MAPKK |
| Description | BLAST best hit to Dual specificity mitogen-activated protein kinase kinase 4 [Salmo salar] |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_17318.1_69071.t1 | 1 | 1 | Pkinase | 1 | 136 | 3.1e-28 | 98.6 | 7.7e-32 | 3.8e-28 | 98.3 |
| pfu_aug1.0_17318.1_69071.t1 | 1 | 1 | Pkinase_Tyr | 4 | 135 | 2.0e-20 | 72.9 | 4.8e-24 | 2.4e-20 | 72.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_17318.1_69071.t1 | gi|213515200|ref|NP_001135384.1| | Dual specificity mitogen-activated protein kinase kinase 4 [Salmo salar] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_17318.1_69071.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17318.1_69071.t1 atgtgaagccatctaacatcctattagacagaaatggaaatataaagttatgtgattttggtattagcggtcagctagta gattcaatagccaagacaagagacgctgggtgtcgaccgtacatggctcctgaaagaatagatcctagggcgtccagtaa aggttatgatattagatctgatgtgtggagccttggtattacactaatggagttagctacaggtaaatttccatatccca agtggaacagtgtgtttgaccagttgacgcaggtcgtccaaggtccagcaccacagctcaaatccaccgagggacatttc tcagaggatttcctcaacttcctcaatacctgtttaacaaaagatgaaaagcaaaggccaaaatatgccaagctactgga tcatctgttcattaaaagatatgaagagatggaggtggatgtagccagttatgtgtgtactattttagaccatatacgtg atacaaatacaaacttacaagaattgactgcttccaattcatga |
|
Protein
| Protein ID | pfu_aug1.0_17318.1_69071.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17318.1_69071.t1 VKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPRASSKGYDIRSDVWSLGITLMELATGKFPYPK WNSVFDQLTQVVQGPAPQLKSTEGHFSEDFLNFLNTCLTKDEKQRPKYAKLLDHLFIKRYEEMEVDVASYVCTILDHIRD TNTNLQELTASNS |
|