Gene
| Gene Model ID | pfu_aug1.0_174.1_43564 |
|---|---|
| Locus | scaffold174.1 : 117586 ... 124616 : + |
| To GenomeBrowser | scaffold174.1:117586..124616 |
| Genes list of scaffold | scaffold174.1 |
| Synonym | pfu_aug2.0_1046.1_21364 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_174.1_43564.t1 | 2 | 1 | Ig_3 | 52 | 139 | 1.6e-14 | 54.0 | 7.8e-10 | 1.7e-06 | 28.4 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 1 | V-set | 52 | 151 | 6.3e-08 | 32.5 | 3.8e-06 | 0.0081 | 16.0 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 1 | Ig_2 | 53 | 143 | 3.4e-21 | 75.1 | 9.2e-13 | 1.9e-09 | 37.4 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 1 | I-set | 55 | 153 | 3.4e-24 | 84.5 | 2.6e-12 | 5.6e-09 | 35.7 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 1 | ig | 61 | 138 | 1.3e-11 | 44.4 | 5.0e-09 | 1.1e-05 | 25.5 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 2 | Ig_3 | 188 | 251 | 1.6e-14 | 54.0 | 6.3e-08 | 0.00013 | 22.3 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 2 | I-set | 189 | 262 | 3.4e-24 | 84.5 | 1.9e-15 | 3.9e-12 | 45.8 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 2 | Ig_2 | 189 | 257 | 3.4e-21 | 75.1 | 3.3e-12 | 6.9e-09 | 35.7 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 2 | ig | 190 | 248 | 1.3e-11 | 44.4 | 1.7e-05 | 0.036 | 14.2 |
| pfu_aug1.0_174.1_43564.t1 | 2 | 2 | V-set | 211 | 252 | 6.3e-08 | 32.5 | 1.6e-05 | 0.034 | 14.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_174.1_43564.t1 | gi|241705996|ref|XP_002411991.1| | IG-like C2-type domain-containing protein, putative [Ixodes scapularis] | 2.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_174.1_43564.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_174.1_43564.t1 atgggcagtttacctcagttattttgtgctatcgtgactctgtcattgagcttttcattttgtctcggtcgattgtggga tcccagctttggattatcaaagagaggaggagttgcacgtgggtcacttttctttaagaagaacgagcttttaccttcaa taacggtagcatctcgccaccaaagcatcgtattaacgtgtcaggcaggcggtaaatcacctacgatacattggttaaag gatgatcagagaattcaacagggagacgacagagattatctgaatgatgagccagcctacgaggaaccgctgaacgaggg ggaaggatcgtccctagggctcagctttacaaaatctaaattatttttggactgtgtgacaccggaacaagccggggaat acacgtgtgtcgctgaaacaacaacagaaagaatagctcagaccacggaacttgttgttggagaagattatgatggcact ggcaattgtttagcaaagagatcattaagaggtcgccgtgagccggctagaatatatctgtggacaagcaatcgcctgga agtacaaggaatggccgtacaattgtactgccgagtggaaggtttccctgcccctactttatcctggtttgacaataacg gagaagaaattttaccaagcaatgataactatcagctcttggataatggagacctgctcataaagcacatttcatggtcc aacatggggagatatcgatgtgagacgactaatggactcggcacggactcggtcaccaccttcctttacccaacgagaaa cacaagaggccgaccttcttag |
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Protein
| Protein ID | pfu_aug1.0_174.1_43564.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_174.1_43564.t1 MGSLPQLFCAIVTLSLSFSFCLGRLWDPSFGLSKRGGVARGSLFFKKNELLPSITVASRHQSIVLTCQAGGKSPTIHWLK DDQRIQQGDDRDYLNDEPAYEEPLNEGEGSSLGLSFTKSKLFLDCVTPEQAGEYTCVAETTTERIAQTTELVVGEDYDGT GNCLAKRSLRGRREPARIYLWTSNRLEVQGMAVQLYCRVEGFPAPTLSWFDNNGEEILPSNDNYQLLDNGDLLIKHISWS NMGRYRCETTNGLGTDSVTTFLYPTRNTRGRPS |
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