Gene
| Gene Model ID | pfu_aug1.0_17440.1_32808 |
|---|---|
| Locus | scaffold17440.1 : 1 ... 19614 : - |
| To GenomeBrowser | scaffold17440.1:1..19614 |
| Genes list of scaffold | scaffold17440.1 |
| Synonym | pfu_aug2.0_279.1_30562 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_17440.1_32808.t1 | 3 | 1 | Sushi | 83 | 136 | 3.0e-19 | 69.1 | 2.9e-10 | 4.2e-06 | 26.9 |
| pfu_aug1.0_17440.1_32808.t1 | 3 | 2 | Sushi | 141 | 191 | 3.0e-19 | 69.1 | 2.6e-10 | 3.8e-06 | 27.1 |
| pfu_aug1.0_17440.1_32808.t1 | 3 | 3 | Sushi | 200 | 247 | 3.0e-19 | 69.1 | 3.3e-09 | 4.9e-05 | 23.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_17440.1_32808.t1 | gi|348556093|ref|XP_003463857.1| | PREDICTED: LOW QUALITY PROTEIN: sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 [Cavia porcellus] | 2.0e-20 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_17440.1_32808.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17440.1_32808.t1 gcaaccactacaacagcgacgacaccactgagtacaacaagctcatctgtcgcctctcatcatcaattttcagtaaaact cgcaagcctagtgagcagttttgcgaaatatctagtttcgtcgagggttgttcggtacatgtatgtgtgttactttccta ttctctgcaactgaacattcaagtccactacttgtatgtcgccagtagtataacttcagaatcgaccaacagctctctgt tgaatgattgtttgatgcctccaactgttaacaatgcgcagtcatcgtatgcattgacaacgttcggaaacaacgctact tactcgtgtgacacggggtataactcttcttcatctgacatgaacatcacttgcttggcatcgggatggagctcagtcaa ccttaattgtgatccaatcgattgtggtctaccaaataccatatcaaatggccagcgaacgtatacagctacgacatatg ggaacatagtgacgtatacatgtgattttggatatgtactaacaggatcaaactcagcagaaatcacctgcggagcaatc acgtggtcaaatataaatttcacttgcgaattgtatgattgtggaacacctccattggtcaataactctgcaagagttgt tactttgacaacatacggcagccctgtagtatatacgtgtgacacgggatataatgcatctgtgtctacttttgacatca cttgcaacacaactggatgggaagtagtaaagtatacatgtgatgaaatagattgtgatgaaattgcgataatgtatcaa gatccaacaacattgacgggaaataacgatactgaaacggatacagctcttaatttcactaagtctgtgtataatgccac gattgctgatcacagcatcattgaccgtgccgttactacgctgtacttagaagggaaagactttgcagaggaagtgacct atacacttactccagaaaactcgtctctagacttcttcaaacttgacactcaatttggtacggtgaaggtgaagaattta cttccccgctccagtgctgtttcgaagtatgtatataacgttacggccgtcgacgaaggaggtaacgatgctacaacgga actaattatcaatacattcaatgcaccgccttattttagcaacctcccctccacaattaccatccttgagacctttgctc caaacgaacacgtttacactgttcgcgtcaaagacttcaccaatgacgacatatgctgcacaatggagaatgttcgtcca caaacactcaactttgagctactcttaatcaattcaaccctacatatctacactacccagaatgctaagttcgtgttcga agacttcaactcttaccaaatcactatatgctgtgaggacacagaaggtggtgccgccaatgggatactacaggttgacg ttaaggaggtcaaggaaaaggaaccctacacaccaccacgtcagtatattttattgattctgaaagaaaggaggggatct ccaacaacacctagttgcagcaccatgcaacatcaacctcccaaaacacccactgtaaaacacaaagaagacacgcacag aaagagacgcagtggtacaaggaacgtcaatcacagaaaaacataa |
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Protein
| Protein ID | pfu_aug1.0_17440.1_32808.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17440.1_32808.t1 NHYNSDDTTEYNKLICRLSSSIFSKTRKPSEQFCEISSFVEGCSVHVCVLLSYSLQLNIQVHYLYVASSITSESTNSSLL NDCLMPPTVNNAQSSYALTTFGNNATYSCDTGYNSSSSDMNITCLASGWSSVNLNCDPIDCGLPNTISNGQRTYTATTYG NIVTYTCDFGYVLTGSNSAEITCGAITWSNINFTCELYDCGTPPLVNNSARVVTLTTYGSPVVYTCDTGYNASVSTFDIT CNTTGWEVVKYTCDEIDCDEIAIMYQDPTTLTGNNDTETDTALNFTKSVYNATIADHSIIDRAVTTLYLEGKDFAEEVTY TLTPENSSLDFFKLDTQFGTVKVKNLLPRSSAVSKYVYNVTAVDEGGNDATTELIINTFNAPPYFSNLPSTITILETFAP NEHVYTVRVKDFTNDDICCTMENVRPQTLNFELLLINSTLHIYTTQNAKFVFEDFNSYQITICCEDTEGGAANGILQVDV KEVKEKEPYTPPRQYILLILKERRGSPTTPSCSTMQHQPPKTPTVKHKEDTHRKRRSGTRNVNHRKT |
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