Gene
| Gene Model ID | pfu_aug1.0_17538.1_47106 |
|---|---|
| Locus | scaffold17538.1 : 1 ... 15136 : - |
| To GenomeBrowser | scaffold17538.1:1..15136 |
| Genes list of scaffold | scaffold17538.1 |
| Synonym | pfu_aug2.0_1359.1_31638 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_17538.1_47106.t1 | 2 | 1 | Cdc6_C | 84 | 102 | 8.2e-13 | 47.8 | 0.74 | 5500.0 | -2.9 |
| pfu_aug1.0_17538.1_47106.t1 | 2 | 2 | Cdc6_C | 246 | 326 | 8.2e-13 | 47.8 | 3.3e-16 | 2.4e-12 | 46.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_17538.1_47106.t1 | gi|260795335|ref|XP_002592661.1| | hypothetical protein BRAFLDRAFT_124128 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_17538.1_47106.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17538.1_47106.t1 gcatggtaaaattagaatcttcatttccagccttctttgaattttttatcaaccaaacttatgtggatgcatctggaaat actttgtgcaatgtagaggaagctttggccaagatccgttggtattggaaccagcatgaaatgcccgccagagtgtttcg ggggcaagataagccaactcccaatgaaatctttctgaatcttgaatctggagtccctgatactgtggcattagaaacca tcctagaaaaatgtgtcgtcatagaaggaaaggaaatttcaaagtcaggaaaaaaaggaaacagcaaaggcatgaaaaca ttttacgtctatagaagttatgatggaagaagattgaagaatatttccactcctttggatgacagtgactcaaaagaaaa ctttacaagtcttcagaaagtgggtctgaccaggatgactttccagccttacacctttaaacagctacaggaaattgttg tgtccagaatgaagggactgaatgcgtttgaggaggatgccatccagctggcagccaggaaagttgctgccgtgtcagga gacgctcgcagggcactggatatatgccgcagggctaccgagataacagaaatcatgtcacctaggaagtccaatgcatt agtgggaatgactcatatagacaaagctttgcaagaaatgttttcctcaccaaaagttgtagctataagaactgcgtcag agcaagagaagactttcctgcgagccatcgtagcagagttccagaggtcaggactagaagaggccgaattccacaaaatc ttcacacaacatgtagcattgtgtcgtattgatggtatgaaggtgccctctacatcagagttagcagggatatgctcgcg tctgggaagtatacgactgttattggtagaacatggtcgaaatgacttacatatgagagtgcgcctcaatgtcagccaag atgatgtactgtatgcacttaaagaaaaaagtggtgtttag |
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Protein
| Protein ID | pfu_aug1.0_17538.1_47106.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17538.1_47106.t1 MVKLESSFPAFFEFFINQTYVDASGNTLCNVEEALAKIRWYWNQHEMPARVFRGQDKPTPNEIFLNLESGVPDTVALETI LEKCVVIEGKEISKSGKKGNSKGMKTFYVYRSYDGRRLKNISTPLDDSDSKENFTSLQKVGLTRMTFQPYTFKQLQEIVV SRMKGLNAFEEDAIQLAARKVAAVSGDARRALDICRRATEITEIMSPRKSNALVGMTHIDKALQEMFSSPKVVAIRTASE QEKTFLRAIVAEFQRSGLEEAEFHKIFTQHVALCRIDGMKVPSTSELAGICSRLGSIRLLLVEHGRNDLHMRVRLNVSQD DVLYALKEKSGV |
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