Gene
| Gene Model ID | pfu_aug1.0_17573.1_47110 |
|---|---|
| Locus | scaffold17573.1 : 11145 ... 21835 : - |
| To GenomeBrowser | scaffold17573.1:11145..21835 |
| Genes list of scaffold | scaffold17573.1 |
| Synonym | pfu_aug2.0_7114.1_16242 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | CaLP-related protein |
| Description | Blast best hit to DDBJ AY663847 (pinctada fucata) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_17573.1_47110.t1 | 3 | 1 | EFhand_Ca_insen | 8 | 41 | 4.7e-11 | 42.4 | 2.7e-09 | 2.6e-06 | 27.2 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 1 | EF-hand_8 | 10 | 28 | 7.7e-31 | 105.4 | 0.00086 | 0.85 | 9.2 |
| pfu_aug1.0_17573.1_47110.t1 | 2 | 1 | SPARC_Ca_bdg | 10 | 73 | 1.3e-06 | 28.3 | 3.9e-05 | 0.039 | 13.9 |
| pfu_aug1.0_17573.1_47110.t1 | 2 | 1 | EF-hand_4 | 12 | 76 | 7.2e-08 | 32.1 | 2.5e-06 | 0.0025 | 17.5 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 1 | EF-hand_6 | 14 | 40 | 1.5e-28 | 96.0 | 5.0e-10 | 4.9e-07 | 29.0 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 1 | EF-hand_1 | 14 | 40 | 5.5e-35 | 116.0 | 1.4e-10 | 1.4e-07 | 30.3 |
| pfu_aug1.0_17573.1_47110.t1 | 3 | 1 | EF-hand_7 | 15 | 75 | 1.7e-31 | 108.1 | 3.4e-18 | 3.3e-15 | 55.9 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 1 | EF-hand_5 | 15 | 38 | 1.9e-23 | 80.6 | 7.2e-08 | 7.1e-05 | 21.9 |
| pfu_aug1.0_17573.1_47110.t1 | 3 | 1 | EF-hand_9 | 18 | 72 | 2.8e-14 | 52.7 | 7.4e-05 | 0.073 | 12.9 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 2 | EF-hand_8 | 27 | 74 | 7.7e-31 | 105.4 | 8.9e-16 | 8.8e-13 | 47.6 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 2 | EF-hand_1 | 51 | 75 | 5.5e-35 | 116.0 | 1.3e-09 | 1.3e-06 | 27.3 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 2 | EF-hand_5 | 57 | 73 | 1.9e-23 | 80.6 | 1.2e-06 | 0.0012 | 18.1 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 2 | EF-hand_6 | 58 | 73 | 1.5e-28 | 96.0 | 0.00017 | 0.17 | 11.8 |
| pfu_aug1.0_17573.1_47110.t1 | 3 | 2 | EFhand_Ca_insen | 69 | 129 | 4.7e-11 | 42.4 | 0.19 | 190.0 | 2.1 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 3 | EF-hand_6 | 70 | 99 | 1.5e-28 | 96.0 | 9.7e-13 | 9.6e-10 | 37.5 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 3 | EF-hand_1 | 70 | 98 | 5.5e-35 | 116.0 | 1.0e-11 | 1.0e-08 | 33.8 |
| pfu_aug1.0_17573.1_47110.t1 | 3 | 2 | EF-hand_7 | 72 | 131 | 1.7e-31 | 108.1 | 6.4e-18 | 6.3e-15 | 55.0 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 3 | EF-hand_5 | 73 | 95 | 1.9e-23 | 80.6 | 3.2e-09 | 3.2e-06 | 26.2 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 3 | EF-hand_8 | 74 | 96 | 7.7e-31 | 105.4 | 0.00022 | 0.22 | 11.1 |
| pfu_aug1.0_17573.1_47110.t1 | 3 | 2 | EF-hand_9 | 74 | 133 | 2.8e-14 | 52.7 | 4.2e-12 | 4.2e-09 | 36.2 |
| pfu_aug1.0_17573.1_47110.t1 | 2 | 2 | SPARC_Ca_bdg | 75 | 128 | 1.3e-06 | 28.3 | 9.8e-05 | 0.097 | 12.7 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 4 | EF-hand_8 | 83 | 133 | 7.7e-31 | 105.4 | 2.5e-16 | 2.5e-13 | 49.4 |
| pfu_aug1.0_17573.1_47110.t1 | 2 | 2 | EF-hand_4 | 84 | 131 | 7.2e-08 | 32.1 | 4.5e-05 | 0.044 | 13.5 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 4 | EF-hand_1 | 106 | 133 | 5.5e-35 | 116.0 | 1.7e-10 | 1.6e-07 | 30.0 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 4 | EF-hand_6 | 106 | 133 | 1.5e-28 | 96.0 | 2.6e-07 | 0.00026 | 20.6 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 4 | EF-hand_5 | 107 | 131 | 1.9e-23 | 80.6 | 2.3e-06 | 0.0023 | 17.2 |
| pfu_aug1.0_17573.1_47110.t1 | 3 | 3 | EFhand_Ca_insen | 137 | 158 | 4.7e-11 | 42.4 | 0.00014 | 0.14 | 12.1 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 5 | EF-hand_8 | 140 | 157 | 7.7e-31 | 105.4 | 6.8e-05 | 0.068 | 12.8 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 5 | EF-hand_1 | 143 | 158 | 5.5e-35 | 116.0 | 0.00012 | 0.12 | 11.7 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 5 | EF-hand_6 | 143 | 158 | 1.5e-28 | 96.0 | 0.0002 | 0.2 | 11.6 |
| pfu_aug1.0_17573.1_47110.t1 | 3 | 3 | EF-hand_7 | 144 | 158 | 1.7e-31 | 108.1 | 0.011 | 11.0 | 6.2 |
| pfu_aug1.0_17573.1_47110.t1 | 5 | 5 | EF-hand_5 | 144 | 157 | 1.9e-23 | 80.6 | 0.0051 | 5.0 | 6.6 |
| pfu_aug1.0_17573.1_47110.t1 | 3 | 3 | EF-hand_9 | 147 | 158 | 2.8e-14 | 52.7 | 0.66 | 650.0 | 0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_17573.1_47110.t1 | gi|260796519|ref|XP_002593252.1| | hypothetical protein BRAFLDRAFT_124868 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_17573.1_47110.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17573.1_47110.t1 atgatggctaagaaaatgaaagataccgactcggaagaggaaattaaagaagcgttcagagtgtttgacacaagcgggaa aggctttataactgcgcaggaactgagacacattatgttgaatttcggtgagaaaatggaggaggaggatgccgacgaga tggtagccgctgctgatattgacggggatggggaaattaattacgaggagttccgagaggcgttccatctctttgacaaa gatggcagtgggagtatatcagccgaagagctcggaacagtcatgagatcattaggtcaaaaccccaatgaacaggaatt acaagatctcgtggaagaaatcgacacagacggcaatggagaggttgatttcaacgagttcttggccatgatggctaaga aaatgaaagacaccgactcggaagaggaaattcgggaagccttcagagtgttcgatagggatgacaaagggtttncctta gtccatcaaaaatgtgttctaaatacgatcaaatga |
|
Protein
| Protein ID | pfu_aug1.0_17573.1_47110.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17573.1_47110.t1 MMAKKMKDTDSEEEIKEAFRVFDTSGKGFITAQELRHIMLNFGEKMEEEDADEMVAAADIDGDGEINYEEFREAFHLFDK DGSGSISAEELGTVMRSLGQNPNEQELQDLVEEIDTDGNGEVDFNEFLAMMAKKMKDTDSEEEIREAFRVFDRDDKGFXL VHQKCVLNTIK |
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