Gene
| Gene Model ID | pfu_aug1.0_175952.1_42885 |
|---|---|
| Locus | scaffold175952.1 : 76 ... 835 : + |
| To GenomeBrowser | scaffold175952.1:76..835 |
| Genes list of scaffold | scaffold175952.1 |
| Synonym | pfu_aug2.0_1414.1_15027 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_175952.1_42885.t1 | 1 | 1 | DUF1077 | 50 | 164 | 0.0 | 156.0 | 0.0 | 0.0 | 155.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_175952.1_42885.t1 | gi|260819286|ref|XP_002604968.1| | hypothetical protein BRAFLDRAFT_126700 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_175952.1_42885.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_175952.1_42885.t1 atgagtacgaaacgcaaacttcacaagtggtcgattgattttacgggatatggaaggccaaagtcggacagacagttggt acctgtcaacacagatctcgcgcggcctgtaggctttgatgataatctgaacaaatctattagtgataaaacaggagaag atgccgaccaaaagctgattgataagagatcatgggacatagccttgggtccattgaagcagattccgatgaatttcttc atcatgtggatggcggggaattccatctctattttcccaattatgatggtcggaatgatgttctttagaccaatacaggc tctcctggcagcacaaaacacttttaaaatgatagagggatctcaagcacctttacaaaaaattgtatacatgtttggaa acttggtttgtctggccttggcggtttataaatgtcagacaatgggtttattacccacatttgcgtctgattggttggca tttgtggatccccaga |
|
Protein
| Protein ID | pfu_aug1.0_175952.1_42885.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_175952.1_42885.t1 MSTKRKLHKWSIDFTGYGRPKSDRQLVPVNTDLARPVGFDDNLNKSISDKTGEDADQKLIDKRSWDIALGPLKQIPMNFF IMWMAGNSISIFPIMMVGMMFFRPIQALLAAQNTFKMIEGSQAPLQKIVYMFGNLVCLALAVYKCQTMGLLPTFASDWLA FVDPQ |
|