Gene
| Gene Model ID | pfu_aug1.0_17634.1_61730 |
|---|---|
| Locus | scaffold17634.1 : 9456 ... 12674 : + |
| To GenomeBrowser | scaffold17634.1:9456..12674 |
| Genes list of scaffold | scaffold17634.1 |
| Synonym | pfu_aug2.0_109.1_30221 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | iroquois |
| Description | It is the best hit to XM_002400517.1 Ixodes scapularis Iroquois-class homeobox protein IRX, putative, mRNA |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_17634.1_61730.t1 | 1 | 1 | Homeobox | 148 | 205 | 4.3e-08 | 32.6 | 1.7e-11 | 8.3e-08 | 31.7 |
| pfu_aug1.0_17634.1_61730.t1 | 1 | 1 | Homeobox_KN | 163 | 202 | 3.7e-15 | 55.3 | 1.6e-18 | 8.0e-15 | 54.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_17634.1_61730.t1 | gi|240960568|ref|XP_002400564.1| | Iroquois-class homeobox protein IRX, putative [Ixodes scapularis] | 1.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_17634.1_61730.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17634.1_61730.t1 atgccaagtcgttctgaccatttggtgtgcacggacccactttgccccaccacgtgtgacccctacacgggccgcatcct ctgtcgatgctatcaacagatgcaggatacacggtcatcttaccaacctaacggacaagtggctgctccacccccacccg cctataactccatgtacccacagaactaccattccatggagccaacactggccgcagcatcgggattgcagccgccgcca ccaccggcaccacccaggatggataacggtgtccccttccctcccaccacaacactagcccagtttccgtccaacctctc ccccaccctggcctccacttctaatatgtctaacgtaggaaccctggatactctactacgatctcaagtctacaactata tgaacagtgtacagtatgctaatttggatctcaatggatcaagaagaaaaaatgccacacgggagagcaccgctgcttta aaggcttggttaaaggaacacagaaagaacccctacccaaccaaggcagagaaagtcatgctggcaattgtaaccaaaat gagcctgactcagatatctacgtggttcgccaatgctagacgacgactgaagaaagaaaatggcggcgagctgaaaccgt tagatgggaatgagaattctaactcaagcgatgatgataatacaagcgactcatccttattcacacaggctacacagcgt ctacaggaaagtgagggcggagcgtctccaggtttcccatctgtagacgccttgcgtgtaccacagtcaatgacgccaat cacaaacgggacgccagagcaaacactgagcctccctcctgctcttgatttccagaacagcaatgacttacctccagctg acttggcatccggatccgcagacagtcttccggttttgttagccggtgattctgatattaaacagcaatccacacttccg tccttctccacatttatggggaactcaaatcagccaaccatggactaccctaaccacttcaacaactgccagtcccaaac accgtgtgatcaatcaagcatgtacggcctcggttcttttaatacaacagcatactcaacatccgacttttcaagtgcag gaaccggaagttacatgccgaattatggttatgactctgttgcgaactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaaggagtgatctcgcttcaat acaaaattcattttttgccatttag |
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Protein
| Protein ID | pfu_aug1.0_17634.1_61730.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_17634.1_61730.t1 MPSRSDHLVCTDPLCPTTCDPYTGRILCRCYQQMQDTRSSYQPNGQVAAPPPPAYNSMYPQNYHSMEPTLAAASGLQPPP PPAPPRMDNGVPFPPTTTLAQFPSNLSPTLASTSNMSNVGTLDTLLRSQVYNYMNSVQYANLDLNGSRRKNATRESTAAL KAWLKEHRKNPYPTKAEKVMLAIVTKMSLTQISTWFANARRRLKKENGGELKPLDGNENSNSSDDDNTSDSSLFTQATQR LQESEGGASPGFPSVDALRVPQSMTPITNGTPEQTLSLPPALDFQNSNDLPPADLASGSADSLPVLLAGDSDIKQQSTLP SFSTFMGNSNQPTMDYPNHFNNCQSQTPCDQSSMYGLGSFNTTAYSTSDFSSAGTGSYMPNYGYDSVANXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXLRSDLASIQNSFFAI |
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