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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_17664.1_47116
Locus scaffold17664.1 : 1 ... 8758 : +
To GenomeBrowser scaffold17664.1:1..8758
Genes list of scaffold scaffold17664.1
Synonym pfu_aug2.0_1925.1_18604

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_17664.1_47116.t1 1 1 HD_3 1 74 2.4e-15 56.6 1.9e-19 2.8e-15 56.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_17664.1_47116.t1 gi|291233041|ref|XP_002736462.1| 6.0e-24

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-4cell 1
8-16cell 1
trochophore 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_17664.1_47116.t1
Definition-
>pfu_aug1.0_17664.1_47116.t1
gcagccatgaaggagattacagcattggtgaacaaagatattggagatgagatatattcattatggctggaatatgaaga
gcaatccagtgaagaagctaaatttgtcaaagatctggacaagtttgagatgattcttcaagcccatgaatatgagaaat
ctgacggccgtcctaacggactacaggaattctttgacagcacagagggcaaattccaaactcgtcaggtgaaggaatgg
gcagcagaacttgtagaaatgaggagaaaaggaaatgacacatga

Protein
Protein IDpfu_aug1.0_17664.1_47116.t1
Definition-
>pfu_aug1.0_17664.1_47116.t1
AAMKEITALVNKDIGDEIYSLWLEYEEQSSEEAKFVKDLDKFEMILQAHEYEKSDGRPNGLQEFFDSTEGKFQTRQVKEW
AAELVEMRRKGNDT

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