pfu_aug1.0_17756.1_32848: Genome browser

Gene

Gene Model ID	pfu_aug1.0_17756.1_32848
Locus	scaffold17756.1 : 1 ... 20794 : +
To GenomeBrowser	scaffold17756.1:1..20794
Genes list of scaffold	scaffold17756.1
Synonym	pfu_aug2.0_2023.1_11985

Manual annotation

Study field	Biomineralization
Gene name	Pinctada fucata N151
Description	NCBI Blastp search "AB534773.1" a putative proteoglycan
mRNA evidence

Study field	Biomineralization
Gene name	test1758
Description	test data
mRNA evidence

Blast Hit to nr / sp

query	Subject ID	Subject Name	evalue
pfu_aug1.0_17756.1_32848.t1	gi\|269935951\|dbj\|BAI49993.1\|	N151 [Pinctada fucata]	0.0

Expression profile

(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries	EST count
>Embryonic/Larval stages
mix	3
egg-4cell	3
egg-Dshape	1
trochophore	1
>Adult tissues
Dshape	1
adductorMuscle	2
maleGonad	2
mantle	2
mantlePallium	1
pearlSac	1

Transcript

Transcript ID	pfu_aug1.0_17756.1_32848.t1
Definition	-
>pfu_aug1.0_17756.1_32848.t1 attgtgccaccatcaggatctcctaaacttgaacaagtcttcagtgcatggaatgagaacaaacgaaaacatccggacga tcagactactcctgttgcaaagaagcctaaaccaggggaatctgacagctcctcatcaagtgattcaaatgatgatgaag atagcaagtcaccaacatcaaagaagtcaagtgtcactaagccattacatttctctggcaacaagcgacaacatgagtct agtacatctgattcagattctgactctgaaagttcagactccgaagatgacaaaaagaagccagccaaaaaattgatgaa aaaatcaccaatgaaaaatgaggaaaagaaatcagcatcttataatgctgtaccacctcctggatcctcccctaaaggga agacagaggcagacacttcttcagattctagctctgatgaagatgtcaagactccttcaaaatctgcagctaaagtgaca ccaaaaactaaagcaagtaaagaagaaagcagtgattcttcaagctctgattctagcgatgatgaagatgacatatcaaa taaaaaatcagcagttaaaaaatcgccaattacccctcctgcntccctaattacctctcctgctaaagcaactccaaaaa ctaacacaagaaaagaagaaagcagtgattcgtcgagctctgattccagtgatgatgaggatgacaaatcagctaatata gcagctaaagaaaagcctgcgcttgaagcaaaagttatacaaaaagctaacagcagaaaggaagaaagcagtgattcttc tagctctgattcaagtgatgatgaagacgtccagccagtcaatagatcagctacagaaaaatctgtggctaagtctactc ttatgagtaaaggaacagataaaactagaacaaaagaaagcagtgattcttctagctctgactccagtgatgatgatgaa aaatctgctaaaaaatcggctgtgtctgctgctgcattgaaagtgacaccaaaacttggtcagaagacggaaagcagcga ttcttcgagttctgaatctgaggaagaaacatctaataaatcagcagcaaaatcgaattcaatcgtcaaaacccctcatc aacgtcagaaaaaggaggaaagcagtgaatcatcaagtgatgattcaagtgaagaagatgacaagcctgctaaaaagtct gttgtaaacaaatctccaacaaaacctcatacaccgacaaataaggtaatccaagtatccaaaaaacaagaaagttcctc cagcacagagtcaagtgaggaggaggagacaaatcattcacagaaatcactgacttctaatacaaataataaaaaagtag tgaaatctatggaaggaagtagcagtgaatctagttctgattcaagcagtgatgatgaaaaaaccaacaaatctgcctca aatgcatctgttaatgttcctcaaagcaaagtgactcagaaaactcagaaagaagatagttcagaatcaagttcagactc tagtgactcagacgaagatgtgaaaaagaaaaagaacaaaacaaatgtaaaaagtaaagcattttcaaaaaagacggaag attccagtagttctgagtcaagttctgaatcagaagatgaacctagtaagaaagttggtaccccaaaaatgacacctata acgaaaaagaaggacaactcctcatcctcatcctcatcctcatcagactctgaggaggagtcatcagaaacaaagcagag gaaggtaacatctacgcctgtgttaaatggcatggtgaatggtatgactaatggaatagattcagacctatcaagtactt gt

Transcript ID

pfu_aug1.0_17756.1_32848.t1

Definition

>pfu_aug1.0_17756.1_32848.t1
attgtgccaccatcaggatctcctaaacttgaacaagtcttcagtgcatggaatgagaacaaacgaaaacatccggacga
tcagactactcctgttgcaaagaagcctaaaccaggggaatctgacagctcctcatcaagtgattcaaatgatgatgaag
atagcaagtcaccaacatcaaagaagtcaagtgtcactaagccattacatttctctggcaacaagcgacaacatgagtct
agtacatctgattcagattctgactctgaaagttcagactccgaagatgacaaaaagaagccagccaaaaaattgatgaa
aaaatcaccaatgaaaaatgaggaaaagaaatcagcatcttataatgctgtaccacctcctggatcctcccctaaaggga
agacagaggcagacacttcttcagattctagctctgatgaagatgtcaagactccttcaaaatctgcagctaaagtgaca
ccaaaaactaaagcaagtaaagaagaaagcagtgattcttcaagctctgattctagcgatgatgaagatgacatatcaaa
taaaaaatcagcagttaaaaaatcgccaattacccctcctgcntccctaattacctctcctgctaaagcaactccaaaaa
ctaacacaagaaaagaagaaagcagtgattcgtcgagctctgattccagtgatgatgaggatgacaaatcagctaatata
gcagctaaagaaaagcctgcgcttgaagcaaaagttatacaaaaagctaacagcagaaaggaagaaagcagtgattcttc
tagctctgattcaagtgatgatgaagacgtccagccagtcaatagatcagctacagaaaaatctgtggctaagtctactc
ttatgagtaaaggaacagataaaactagaacaaaagaaagcagtgattcttctagctctgactccagtgatgatgatgaa
aaatctgctaaaaaatcggctgtgtctgctgctgcattgaaagtgacaccaaaacttggtcagaagacggaaagcagcga
ttcttcgagttctgaatctgaggaagaaacatctaataaatcagcagcaaaatcgaattcaatcgtcaaaacccctcatc
aacgtcagaaaaaggaggaaagcagtgaatcatcaagtgatgattcaagtgaagaagatgacaagcctgctaaaaagtct
gttgtaaacaaatctccaacaaaacctcatacaccgacaaataaggtaatccaagtatccaaaaaacaagaaagttcctc
cagcacagagtcaagtgaggaggaggagacaaatcattcacagaaatcactgacttctaatacaaataataaaaaagtag
tgaaatctatggaaggaagtagcagtgaatctagttctgattcaagcagtgatgatgaaaaaaccaacaaatctgcctca
aatgcatctgttaatgttcctcaaagcaaagtgactcagaaaactcagaaagaagatagttcagaatcaagttcagactc
tagtgactcagacgaagatgtgaaaaagaaaaagaacaaaacaaatgtaaaaagtaaagcattttcaaaaaagacggaag
attccagtagttctgagtcaagttctgaatcagaagatgaacctagtaagaaagttggtaccccaaaaatgacacctata
acgaaaaagaaggacaactcctcatcctcatcctcatcctcatcagactctgaggaggagtcatcagaaacaaagcagag
gaaggtaacatctacgcctgtgttaaatggcatggtgaatggtatgactaatggaatagattcagacctatcaagtactt
gt

Protein

Protein ID	pfu_aug1.0_17756.1_32848.t1
Definition	-
>pfu_aug1.0_17756.1_32848.t1 IVPPSGSPKLEQVFSAWNENKRKHPDDQTTPVAKKPKPGESDSSSSSDSNDDEDSKSPTSKKSSVTKPLHFSGNKRQHES STSDSDSDSESSDSEDDKKKPAKKLMKKSPMKNEEKKSASYNAVPPPGSSPKGKTEADTSSDSSSDEDVKTPSKSAAKVT PKTKASKEESSDSSSSDSSDDEDDISNKKSAVKKSPITPPXSLITSPAKATPKTNTRKEESSDSSSSDSSDDEDDKSANI AAKEKPALEAKVIQKANSRKEESSDSSSSDSSDDEDVQPVNRSATEKSVAKSTLMSKGTDKTRTKESSDSSSSDSSDDDE KSAKKSAVSAAALKVTPKLGQKTESSDSSSSESEEETSNKSAAKSNSIVKTPHQRQKKEESSESSSDDSSEEDDKPAKKS VVNKSPTKPHTPTNKVIQVSKKQESSSSTESSEEEETNHSQKSLTSNTNNKKVVKSMEGSSSESSSDSSSDDEKTNKSAS NASVNVPQSKVTQKTQKEDSSESSSDSSDSDEDVKKKKNKTNVKSKAFSKKTEDSSSSESSSESEDEPSKKVGTPKMTPI TKKKDNSSSSSSSSSDSEEESSETKQRKVTSTPVLNGMVNGMTNGIDSDLSSTC

Protein ID

pfu_aug1.0_17756.1_32848.t1

Definition

>pfu_aug1.0_17756.1_32848.t1
IVPPSGSPKLEQVFSAWNENKRKHPDDQTTPVAKKPKPGESDSSSSSDSNDDEDSKSPTSKKSSVTKPLHFSGNKRQHES
STSDSDSDSESSDSEDDKKKPAKKLMKKSPMKNEEKKSASYNAVPPPGSSPKGKTEADTSSDSSSDEDVKTPSKSAAKVT
PKTKASKEESSDSSSSDSSDDEDDISNKKSAVKKSPITPPXSLITSPAKATPKTNTRKEESSDSSSSDSSDDEDDKSANI
AAKEKPALEAKVIQKANSRKEESSDSSSSDSSDDEDVQPVNRSATEKSVAKSTLMSKGTDKTRTKESSDSSSSDSSDDDE
KSAKKSAVSAAALKVTPKLGQKTESSDSSSSESEEETSNKSAAKSNSIVKTPHQRQKKEESSESSSDDSSEEDDKPAKKS
VVNKSPTKPHTPTNKVIQVSKKQESSSSTESSEEEETNHSQKSLTSNTNNKKVVKSMEGSSSESSSDSSSDDEKTNKSAS
NASVNVPQSKVTQKTQKEDSSESSSDSSDSDEDVKKKKNKTNVKSKAFSKKTEDSSSSESSSESEDEPSKKVGTPKMTPI
TKKKDNSSSSSSSSSDSEEESSETKQRKVTSTPVLNGMVNGMTNGIDSDLSSTC

Genome browser

OIST Marine Genomics Unit since 2008