Gene
| Gene Model ID | pfu_aug1.0_178.1_36343 |
|---|---|
| Locus | scaffold178.1 : 32466 ... 61408 : + |
| To GenomeBrowser | scaffold178.1:32466..61408 |
| Genes list of scaffold | scaffold178.1 |
| Synonym | pfu_aug2.0_14.1_13392 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_178.1_36343.t1 | 3 | 1 | DUF1080 | 57 | 168 | 9.1e-06 | 25.6 | 0.00018 | 0.45 | 10.3 |
| pfu_aug1.0_178.1_36343.t1 | 5 | 1 | Laminin_G_2 | 62 | 191 | 4.5e-40 | 136.6 | 6.1e-20 | 1.5e-16 | 60.5 |
| pfu_aug1.0_178.1_36343.t1 | 4 | 1 | Laminin_G_1 | 62 | 193 | 1.7e-24 | 86.2 | 3.3e-16 | 8.3e-13 | 48.4 |
| pfu_aug1.0_178.1_36343.t1 | 4 | 1 | Laminin_G_3 | 114 | 191 | 3.5e-11 | 43.5 | 2.0e-08 | 4.9e-05 | 23.6 |
| pfu_aug1.0_178.1_36343.t1 | 3 | 2 | DUF1080 | 202 | 273 | 9.1e-06 | 25.6 | 7.6e-05 | 0.19 | 11.6 |
| pfu_aug1.0_178.1_36343.t1 | 5 | 2 | Laminin_G_2 | 238 | 271 | 4.5e-40 | 136.6 | 0.028 | 70.0 | 3.4 |
| pfu_aug1.0_178.1_36343.t1 | 4 | 2 | Laminin_G_3 | 245 | 293 | 3.5e-11 | 43.5 | 0.054 | 130.0 | 2.7 |
| pfu_aug1.0_178.1_36343.t1 | 3 | 1 | EGF | 336 | 362 | 9.5e-06 | 25.4 | 1.2e-06 | 0.003 | 17.4 |
| pfu_aug1.0_178.1_36343.t1 | 3 | 2 | EGF | 517 | 526 | 9.5e-06 | 25.4 | 0.18 | 450.0 | 0.9 |
| pfu_aug1.0_178.1_36343.t1 | 3 | 3 | DUF1080 | 602 | 684 | 9.1e-06 | 25.6 | 0.19 | 470.0 | 0.5 |
| pfu_aug1.0_178.1_36343.t1 | 5 | 3 | Laminin_G_2 | 610 | 735 | 4.5e-40 | 136.6 | 7.7e-17 | 1.9e-13 | 50.5 |
| pfu_aug1.0_178.1_36343.t1 | 4 | 2 | Laminin_G_1 | 610 | 732 | 1.7e-24 | 86.2 | 1.6e-10 | 4.0e-07 | 30.0 |
| pfu_aug1.0_178.1_36343.t1 | 4 | 3 | Laminin_G_3 | 618 | 728 | 3.5e-11 | 43.5 | 7.1e-07 | 0.0018 | 18.5 |
| pfu_aug1.0_178.1_36343.t1 | 3 | 3 | EGF | 759 | 784 | 9.5e-06 | 25.4 | 1.9e-08 | 4.7e-05 | 23.2 |
| pfu_aug1.0_178.1_36343.t1 | 5 | 4 | Laminin_G_2 | 831 | 872 | 4.5e-40 | 136.6 | 5.2e-06 | 0.013 | 15.5 |
| pfu_aug1.0_178.1_36343.t1 | 4 | 3 | Laminin_G_1 | 831 | 859 | 1.7e-24 | 86.2 | 0.36 | 880.0 | -0.2 |
| pfu_aug1.0_178.1_36343.t1 | 4 | 4 | Laminin_G_3 | 887 | 931 | 3.5e-11 | 43.5 | 0.84 | 2100.0 | -1.2 |
| pfu_aug1.0_178.1_36343.t1 | 5 | 5 | Laminin_G_2 | 927 | 986 | 4.5e-40 | 136.6 | 0.0049 | 12.0 | 5.9 |
| pfu_aug1.0_178.1_36343.t1 | 4 | 4 | Laminin_G_1 | 935 | 989 | 1.7e-24 | 86.2 | 0.044 | 110.0 | 2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_178.1_36343.t1 | gi|328780915|ref|XP_394721.4| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_178.1_36343.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_178.1_36343.t1 atgtgtattaacaagtatgacaaggctgtgtgtgactgctttgaaacgggtcgtgagggggacacatgccaaatactaga ccccacagaggtgacgctacaaggatttgagtggttgacctttgacctttatcagcgaccagaggacagagtagctatgg aaaacagcagatacagtttacagttcaagtctgagcgaggatcaggagtgttactttacgctgtaggtaatatagctgac ggtaggactggacacacacacgttatagcctcagtacataatggagtggtcaaggcatccgtagcgttcagtgaccaaca caaactagaacaggaaatgggcatgtctgtcgatgataatcaatggcacaatctcaccatcatacatagaaaaacggtgg tagaattttacctggacggagtgatgtatcgcaaggtctcaaatacaagtaactactacctcaacctggaccctaaggtc tatattggcgggggagataatctggtcaaaactgtcggtttacaggtaacaaggaacttcgtaggatgtctgaagaatgt gtatatcaatgatgcctcagtgctgtaccagctgagcactaacgtcaccacatcacggtactatggtggtgaccaggtgc agttcggttgtagtaaggtttggattcatgacagaatgcctctgatgaagtttataccgttatactctgataaacgtgtg aagacatccagagttccaatggaagtcagcaacaatcagtggaattctctcagcatcattgtcactggaagtcaggtgaa ggtggcagctaattacgtagttaaatcttatgactttgagggaacagttatgtctgctggtcatatcgttatagggtacg gcagtagaaattatgatgttatcaacggtgaagattttgaccccatagagaggttaaactctgcccctccccccggcgac atcatcagtggagtgttcatggacagctgtcacctaatagattactgccaggacacattgccatgtcaacatcatggaaa gtgcctgtctgattggatgggtgtgtcatgtgactgctcaaggacagattatatgggaaaaacatgtcaattcccaaagt acaggacgagctgtgacggttactaccaagcagggtcccgtgtatcgggagtatatatcatagatgtcgatggtgatggt ccactgaacgccacttatgtccagtgcattatgggataccagcatgatgatgaactgtttggtaaaactgtggttgaaaa taacttagtcccagaaacgcagataagaggagatgaaatggcagatatgagaatgatcataaactatagggagttgtcat taaagcacctgttgaatctgacatccaaatctgagtggtgccaacagaaaatacaatataactgttataattctcctcta agactaggagatcgtacaaccttcaaggctgccagtggtcagtttgtggattacatgggacaatcaaagccaaaatcctg tccatgttcactagatgataaatgtgtacagggatataactgtaactgtgatgcaggagcgaacgagtggagatcagatg agggttataacaaggtgaatgtacagcttcctataactgaggtgacagtactacagaacacggatgtcgtagatggtgat agtaacggtacactaacactgggacctctagaatgctgggctaatgatgaatcgttgtccagtatgtctgtgacgtttaa atcaccatttgcctctctgcagctgaagggaatggatccttctgagtcagggattctgagttttagcttccgtacattta gttcctcagctacgttactacaccaaaccggagattccgataataacaacaactttaaaattacactagtagcaggtcaa cacctacagtttgattttgaaattagtggatctgtcatgaagagtgacttctatacagacttgcctataaatgatggaga atggcatctggttataatagagatcaacaatggtcaaattagatgttccttggatctgcagcaaaacatactggatgtgc cgagtgtgccagatggaagtctgcagtttgccgggccgttattcttgggagccccatacaacataggagatcccacccag attccaggtttagtaggttgtgtgaaaggtatgagatataacggagccattcacgatctgacagcagaagtggatcagag tatgacagacatagtacaaggctgtacaccatactgtaagattatgaagccgtgtatgaacaatgccacatgtgtagaga aatgggacggttacgagtgtgaatgtactaacaagtgggctcactctggacacaattgtgaaatcaatataaatgagaat gtcgctacattatccggttctccatcttcctaccttgacataagcgtgggaagggaccctcggctaattgactccacaat attacttagcttccggagccgtgttcaccgcggacttctcttctacatgtatgatgaccttaataacttcatacagctgg aggtgaagacaggctaccgacttgtactcagctttaatcagtttcaaacaattatgtctcgggaagtcaaaattcctgag gcatctggtgtatttgatggtggtaatgctgtagaatatcggtaccggccgtatggatctgctgtcatgacaacctccga ggaattctcgtttgttttcaagtccaactgcaccgaggagaagtggatgctgcttgccttgtggtgggctagcaaggaac ccagtcatggatacatagtagttactctacatcccaaggacggcatcatcgtacagtggggaatggacactgtcaatagg ttattcaatgaaaaggggaaattttgtgatggaacagcacacagatttacatatcgtcgaaactcgactacgatctacat agggctgccagcagatatccgtaatgtagattatccggtacagaggagcttccaaccactgcccgattcagatgtagatt atcccataccaaacgtatacagcaagaaaaagaaccgacctgcgtcgtctatatctgaggtactagaggaaatggaacgt cagaggaaagctaaagagcttggggtagatcctgatacattcgaggactcccctaaaagtactcgatctagcgtcaatca aggtgacggagagctggagtgggacccacagacggacagaacgccactcactgtggaatatttgtataagttagtacctc cgagactagacagagttatctccctgcctcaccatctcataatcttggagaatcctgacgaggatgagacgttggactcc agtgaggatcgtatttcctgtagtacagacagtagtgatccattaaaggtgttagaggagcagagtgacttaacacagga gtgtaacggtgacagcgggtatgaagccgagtcccagcgtaacggagaggatgatcagttgttagtagatcatgacactg ccgatacaataaccccgcccacacccgatgactcaaaaatgtactacgatatatcgtgtctgacataccccccacatgac tctccaaactttgcctctacgccgcggaagttattaatagatcattttcaaaatgacacgtag |
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Protein
| Protein ID | pfu_aug1.0_178.1_36343.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_178.1_36343.t1 MCINKYDKAVCDCFETGREGDTCQILDPTEVTLQGFEWLTFDLYQRPEDRVAMENSRYSLQFKSERGSGVLLYAVGNIAD GRTGHTHVIASVHNGVVKASVAFSDQHKLEQEMGMSVDDNQWHNLTIIHRKTVVEFYLDGVMYRKVSNTSNYYLNLDPKV YIGGGDNLVKTVGLQVTRNFVGCLKNVYINDASVLYQLSTNVTTSRYYGGDQVQFGCSKVWIHDRMPLMKFIPLYSDKRV KTSRVPMEVSNNQWNSLSIIVTGSQVKVAANYVVKSYDFEGTVMSAGHIVIGYGSRNYDVINGEDFDPIERLNSAPPPGD IISGVFMDSCHLIDYCQDTLPCQHHGKCLSDWMGVSCDCSRTDYMGKTCQFPKYRTSCDGYYQAGSRVSGVYIIDVDGDG PLNATYVQCIMGYQHDDELFGKTVVENNLVPETQIRGDEMADMRMIINYRELSLKHLLNLTSKSEWCQQKIQYNCYNSPL RLGDRTTFKAASGQFVDYMGQSKPKSCPCSLDDKCVQGYNCNCDAGANEWRSDEGYNKVNVQLPITEVTVLQNTDVVDGD SNGTLTLGPLECWANDESLSSMSVTFKSPFASLQLKGMDPSESGILSFSFRTFSSSATLLHQTGDSDNNNNFKITLVAGQ HLQFDFEISGSVMKSDFYTDLPINDGEWHLVIIEINNGQIRCSLDLQQNILDVPSVPDGSLQFAGPLFLGAPYNIGDPTQ IPGLVGCVKGMRYNGAIHDLTAEVDQSMTDIVQGCTPYCKIMKPCMNNATCVEKWDGYECECTNKWAHSGHNCEININEN VATLSGSPSSYLDISVGRDPRLIDSTILLSFRSRVHRGLLFYMYDDLNNFIQLEVKTGYRLVLSFNQFQTIMSREVKIPE ASGVFDGGNAVEYRYRPYGSAVMTTSEEFSFVFKSNCTEEKWMLLALWWASKEPSHGYIVVTLHPKDGIIVQWGMDTVNR LFNEKGKFCDGTAHRFTYRRNSTTIYIGLPADIRNVDYPVQRSFQPLPDSDVDYPIPNVYSKKKNRPASSISEVLEEMER QRKAKELGVDPDTFEDSPKSTRSSVNQGDGELEWDPQTDRTPLTVEYLYKLVPPRLDRVISLPHHLIILENPDEDETLDS SEDRISCSTDSSDPLKVLEEQSDLTQECNGDSGYEAESQRNGEDDQLLVDHDTADTITPPTPDDSKMYYDISCLTYPPHD SPNFASTPRKLLIDHFQNDT |
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