Gene
| Gene Model ID | pfu_aug1.0_1782.1_51414 |
|---|---|
| Locus | scaffold1782.1 : 6037 ... 12005 : - |
| To GenomeBrowser | scaffold1782.1:6037..12005 |
| Genes list of scaffold | scaffold1782.1 |
| Synonym | pfu_aug2.0_81.1_03566 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1782.1_51414.t1 | 1 | 1 | Ribosomal_S3_C | 2 | 62 | 1.4e-13 | 50.8 | 1.2e-17 | 1.8e-13 | 50.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1782.1_51414.t1 | gi|223646682|gb|ACN10099.1| | 40S ribosomal protein S3 [Salmo salar] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1782.1_51414.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1782.1_51414.t1 atggagagtggagctaagggctgtgaagtagtggtgtccggtaagctgagaggccagagagccaagtctatgaagtttgt cgacggccttatgatccactcaggagatcccatcaatgattacgttgatactgctgtcagacacgtacttctcagacaag gtgtgctgggaattaaagtcaaaattatgttaccatgggatcccagtggtaagatcggacccaagaggccgttacctgat catgtcagtgtggtagaacctaaagacgaagcagcaccagcacatccatacagtgaacagaaaggtgccaaaccaacaga gccacagcaagcgcctgcacagtgatatgtgtga |
|
Protein
| Protein ID | pfu_aug1.0_1782.1_51414.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1782.1_51414.t1 MESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPINDYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKRPLPD HVSVVEPKDEAAPAHPYSEQKGAKPTEPQQAPAQXYV |
|