Gene
| Gene Model ID | pfu_aug1.0_178952.1_35709 |
|---|---|
| Locus | scaffold178952.1 : 21 ... 824 : + |
| To GenomeBrowser | scaffold178952.1:21..824 |
| Genes list of scaffold | scaffold178952.1 |
| Synonym | NA |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | PfCHS1 |
| Description | Chitin synthase partial sequence, hit to BLAST (NCBI, BAF73720.1) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_178952.1_35709.t1 | 1 | 1 | Chitin_synth_2 | 3 | 142 | 3.6e-24 | 85.0 | 8.6e-28 | 4.3e-24 | 84.8 |
| pfu_aug1.0_178952.1_35709.t1 | 1 | 1 | Glyco_trans_2_3 | 4 | 132 | 8.5e-10 | 38.6 | 1.9e-13 | 9.5e-10 | 38.4 |
| pfu_aug1.0_178952.1_35709.t1 | 1 | 1 | Glyco_tranf_2_3 | 7 | 130 | 9.5e-10 | 38.6 | 2.4e-13 | 1.2e-09 | 38.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_178952.1_35709.t1 | gi|152205944|dbj|BAF73720.1| | chitin synthase [Pinctada fucata] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_178952.1_35709.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_178952.1_35709.t1 atgaagaaaaacaagaaagtaggcgctgtttgtggaaggatccatcccatcggatcaggacccatggtttggtatcagca atttgagtacgccgtcggccattggctgcagaaagctgctgagcacgtgtttgggtgtgtcttgtgttgccccggatgtt tcagtttgttcagaggttctgctgtcatggatgataacgttatgaaaatgtacacaacaaaaccaacggaagcccgtcat tatatccagtttgagcaaggggaggatcgatggctgtgtactctgatgttacaacaaggtcataggattgactactgcgc aggagctgatgctttgacctttgcaccagaaacatttaacgagttcttcaaccagcgtcgccgatggtctccctctacct tagccaacatgatggatctgctatcctcgtggcgtgacacggtcagaatcaacgacaacatcagtcgtccgttcgtccta tatcagttcgttctgatggcgtccaccatttt |
|
Protein
| Protein ID | pfu_aug1.0_178952.1_35709.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_178952.1_35709.t1 MKKNKKVGAVCGRIHPIGSGPMVWYQQFEYAVGHWLQKAAEHVFGCVLCCPGCFSLFRGSAVMDDNVMKMYTTKPTEARH YIQFEQGEDRWLCTLMLQQGHRIDYCAGADALTFAPETFNEFFNQRRRWSPSTLANMMDLLSSWRDTVRINDNISRPFVL YQFVLMASTI |
|