Gene
| Gene Model ID | pfu_aug1.0_18.1_14701 |
|---|---|
| Locus | scaffold18.1 : 84626 ... 97767 : + |
| To GenomeBrowser | scaffold18.1:84626..97767 |
| Genes list of scaffold | scaffold18.1 |
| Synonym | pfu_aug2.0_793.1_11188 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18.1_14701.t1 | 4 | 1 | zf-H2C2_2 | 620 | 625 | 1.4e-13 | 50.4 | 0.95 | 2800.0 | -1.1 |
| pfu_aug1.0_18.1_14701.t1 | 3 | 1 | zf-C2H2 | 642 | 666 | 1.5e-10 | 40.7 | 1.3e-05 | 0.038 | 14.3 |
| pfu_aug1.0_18.1_14701.t1 | 3 | 1 | zf-C2H2_4 | 642 | 666 | 4.3e-08 | 32.9 | 0.00055 | 1.6 | 9.2 |
| pfu_aug1.0_18.1_14701.t1 | 4 | 2 | zf-H2C2_2 | 658 | 685 | 1.4e-13 | 50.4 | 9.2e-11 | 2.7e-07 | 30.5 |
| pfu_aug1.0_18.1_14701.t1 | 3 | 2 | zf-C2H2 | 672 | 696 | 1.5e-10 | 40.7 | 5.5e-09 | 1.6e-05 | 24.9 |
| pfu_aug1.0_18.1_14701.t1 | 3 | 2 | zf-C2H2_4 | 672 | 696 | 4.3e-08 | 32.9 | 2.6e-07 | 0.00078 | 19.6 |
| pfu_aug1.0_18.1_14701.t1 | 4 | 3 | zf-H2C2_2 | 689 | 711 | 1.4e-13 | 50.4 | 1.8e-11 | 5.2e-08 | 32.8 |
| pfu_aug1.0_18.1_14701.t1 | 3 | 3 | zf-C2H2 | 702 | 724 | 1.5e-10 | 40.7 | 8.1e-08 | 0.00024 | 21.2 |
| pfu_aug1.0_18.1_14701.t1 | 3 | 3 | zf-C2H2_4 | 702 | 724 | 4.3e-08 | 32.9 | 6.7e-06 | 0.02 | 15.2 |
| pfu_aug1.0_18.1_14701.t1 | 4 | 4 | zf-H2C2_2 | 716 | 725 | 1.4e-13 | 50.4 | 0.13 | 370.0 | 1.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18.1_14701.t1 | gi|6981572|ref|NP_036893.1| | transcription factor Sp4 [Rattus norvegicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_18.1_14701.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18.1_14701.t1 atggacgtccaaccgtcccctctggccctcctagccgcaacttgcagcaaaataggtgcccctcccccaaattcggacgg aacagcaaaccagaacggcgaacaaatcagagttgtggggcaggttcagcagggtggggaagtcgtcacgcccagtttaa ttcagctaccgaatggaacttatgtggacgccagtggaaaacagcaagttgggattcctgtaaccattgggccaaatgga cagatcattcaacaagggacaccaggtgcccagcagattgttggacccggtgggaacttagcttacaatgtgatacccca atttcagaccattggggttgacagtcaggatgggtctgccatcataataccagcttcaccctcagtggggaatgctgggc agacatttattggaaatcagcaagtgtttgccactccgaatgggcagttcgtgcgtgcgcagggaattggaggaaatatc cttcctacgggcatgggaatgggcgcggtggcgagtattgggggcaatattgttaacattgggggtaacctagtcagtct gcctggtatacaaaatatgtcaaatactgtacgtcccattcaaacgctacaacttcagtcaccggttcaacaaatgatgc cgaacattattcaaatacctgtgacgggaccaaacggtcaagctacaatgcaaacggttcaattacaaaatgttgcaatg ccgacactgcaagctggaaacgttcagacaactcaaagtacagaaaattcagcaccgcagatttcgacagccgtatcggc tacaactcaatcggtacaacacccacaaacgattcagattcaaccgcatgtgatagaaactacaaaacccgatcagacga caacgccccaaaaaattatcagcggtaccaatgagaataatgaagcatctactccgaagacactgactattgtggcaaac ccaataacaacagaatctgctgcaacaaatgcagctgtcgcgcagcctcaagttgctaatcaatccatgttgacttcagc cattcccaccagtgcttttcagcaaatgccaacgttagtgtacaacgcagctactggtcagctgattcctctgtcacagg gaatgatgggaacaaacggtcagctgattacgtcaacgccacaaatagcaacctcaactaccacgtccaccagtacagtg gctacaccacaacctgtcaacattatgccggtgacccctcagcagatcggtttacaagctattggtggacagggatttca gaatattcagtttgctaatgcccaaggtcaaatcattacccagaatccatttctgccgacgttaaacattgcaaacgtca gagcaccaaacgctatacaaacatttcagattcctaatgtacagcccgtacctaatattcagggcgtccaggcagtatcc aacatccaaggactgcagacattccaacttacacctaacggacaattgatagcagcgaatcccgcaccaggcacgataca aaccaatcttggctctttaacggtaactccacaaggggcaataactctggcaggatctaatattaaccaaacaggaacac agcagcctaccagtccccaacagtatgccacagtacagaacgttcaaacaggacagcagatagctgtttctcaagccggg ggtgtggtgccaagtcaacctgtagcaggccaaacgttacagatttccactgatcctgccgagggcggaaaatggcaggt ggtcactgctaatggtcagcagaccataacggcaatcagtccgactcagacctcaggggaggtcactcctggtagaaggc tacgcagagttgcctgtacttgtcctaattgcaaggaattggaaggaaggagtcggacagctggtgaaaatcaaaaacgt ctacatatttgtcatgtaccgggctgtaacaaagtttatggcaaaacatcacacctacgggcacatttaagatggcatac gggtgagagaccttttgtgtgtaattggttattctgtggtaaacgatttacgcggtcagatgagctacaaaggcacagac ggacgcatacaggtgaaaagaagtttgaatgtccagactgtcacaaaagatttatgagaagtgaccacctcacaaaacat aggaaaacacatttaaacagaggcaaaggcaatacgagtttagaatctgtggaatttgttgaagagggagaacagaaata tgacgatactggtattatcaccgtggaaacagaggatggacaacaaacgacagtacgatacgaagtgcaaaatgttatta ccgaaccagaccaagtttctgaggaggggtga |
|
Protein
| Protein ID | pfu_aug1.0_18.1_14701.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18.1_14701.t1 MDVQPSPLALLAATCSKIGAPPPNSDGTANQNGEQIRVVGQVQQGGEVVTPSLIQLPNGTYVDASGKQQVGIPVTIGPNG QIIQQGTPGAQQIVGPGGNLAYNVIPQFQTIGVDSQDGSAIIIPASPSVGNAGQTFIGNQQVFATPNGQFVRAQGIGGNI LPTGMGMGAVASIGGNIVNIGGNLVSLPGIQNMSNTVRPIQTLQLQSPVQQMMPNIIQIPVTGPNGQATMQTVQLQNVAM PTLQAGNVQTTQSTENSAPQISTAVSATTQSVQHPQTIQIQPHVIETTKPDQTTTPQKIISGTNENNEASTPKTLTIVAN PITTESAATNAAVAQPQVANQSMLTSAIPTSAFQQMPTLVYNAATGQLIPLSQGMMGTNGQLITSTPQIATSTTTSTSTV ATPQPVNIMPVTPQQIGLQAIGGQGFQNIQFANAQGQIITQNPFLPTLNIANVRAPNAIQTFQIPNVQPVPNIQGVQAVS NIQGLQTFQLTPNGQLIAANPAPGTIQTNLGSLTVTPQGAITLAGSNINQTGTQQPTSPQQYATVQNVQTGQQIAVSQAG GVVPSQPVAGQTLQISTDPAEGGKWQVVTANGQQTITAISPTQTSGEVTPGRRLRRVACTCPNCKELEGRSRTAGENQKR LHICHVPGCNKVYGKTSHLRAHLRWHTGERPFVCNWLFCGKRFTRSDELQRHRRTHTGEKKFECPDCHKRFMRSDHLTKH RKTHLNRGKGNTSLESVEFVEEGEQKYDDTGIITVETEDGQQTTVRYEVQNVITEPDQVSEEG |
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