Gene
Gene Model ID | pfu_aug1.0_18.1_14703 |
---|---|
Locus | scaffold18.1 : 124116 ... 139869 : + |
To GenomeBrowser | scaffold18.1:124116..139869 |
Genes list of scaffold | scaffold18.1 |
Synonym | pfu_aug2.0_2528.1_28842 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_18.1_14703.t1 | 1 | 1 | LETM1 | 58 | 285 | 1.3e-29 | 103.1 | 2.5e-33 | 1.9e-29 | 102.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_18.1_14703.t1 | gi|321457958|gb|EFX69034.1| | hypothetical protein DAPPUDRAFT_301183 [Daphnia pulex] | 1.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
trochophore | 1 |
>Adult tissues | |
adductorMuscle | 1 |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_18.1_14703.t1 |
---|---|
Definition | - |
>pfu_aug1.0_18.1_14703.t1 atgataacttgcagagtcgtcttggcaagacagactgttcaacaagggaatctgtggataagatgtctgtcacataaaca aaaggacaatattgaaagtcaccctaagaaaaccaagtcatgggtattgaggaaagtatccagatttgtcgagagctcgg agagaatgttagagaaaaaagctccaaaggtgtataagggatatagatacttcaaggatggtgtccaagaattaggacag gacacaaaggcctattacaagataagtaaggagattgaaggtggaaaatccttggatacgttcacttacagagaacttat gttatatagaaagatgcctgatgaacttttcaaagccattcctatacttatcttagctgttataccgtttgggatttatt tgtttgctatagtgtactttttcccacgcacttttctcacatcacatttcttgtctgctgaattacaaagagagatatac cttgacagacataagaagcagcttaaattctatggacctttactgaaggacatggaggcgcagctaaaccccgaaactcg taaaacaaacccgaatgaaaccaaaattatccaaaatattcttcaggagatacatagagggcatgaacccggggtcaaag aaattgttcaatctcgcaaactttttgagtctagtccatatagcattgaaaagttacctatcagacacagaattcattta gctgactgctggggatacaagacttctcagctaggcattcatcgagaggctgttttattacttcatatagatcgtgcaat gataaaaatgggtacaggtgtactatccgataaggaagtaaaggaggcttgttttcataattaa |
Protein
Protein ID | pfu_aug1.0_18.1_14703.t1 |
---|---|
Definition | - |
>pfu_aug1.0_18.1_14703.t1 MITCRVVLARQTVQQGNLWIRCLSHKQKDNIESHPKKTKSWVLRKVSRFVESSERMLEKKAPKVYKGYRYFKDGVQELGQ DTKAYYKISKEIEGGKSLDTFTYRELMLYRKMPDELFKAIPILILAVIPFGIYLFAIVYFFPRTFLTSHFLSAELQREIY LDRHKKQLKFYGPLLKDMEAQLNPETRKTNPNETKIIQNILQEIHRGHEPGVKEIVQSRKLFESSPYSIEKLPIRHRIHL ADCWGYKTSQLGIHREAVLLLHIDRAMIKMGTGVLSDKEVKEACFHN |