Gene
| Gene Model ID | pfu_aug1.0_18.1_14721 |
|---|---|
| Locus | scaffold18.1 : 418377 ... 441495 : - |
| To GenomeBrowser | scaffold18.1:418377..441495 |
| Genes list of scaffold | scaffold18.1 |
| Synonym | pfu_aug2.0_302.1_07327 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18.1_14721.t1 | 5 | 1 | Btz | 14 | 51 | 9.8e-19 | 67.6 | 1.0 | 15000.0 | -5.7 |
| pfu_aug1.0_18.1_14721.t1 | 5 | 2 | Btz | 75 | 165 | 9.8e-19 | 67.6 | 6.6e-23 | 9.8e-19 | 67.6 |
| pfu_aug1.0_18.1_14721.t1 | 5 | 3 | Btz | 320 | 351 | 9.8e-19 | 67.6 | 1.0 | 15000.0 | -7.2 |
| pfu_aug1.0_18.1_14721.t1 | 5 | 4 | Btz | 469 | 469 | 9.8e-19 | 67.6 | 1.0 | 15000.0 | -4.9 |
| pfu_aug1.0_18.1_14721.t1 | 5 | 5 | Btz | 649 | 649 | 9.8e-19 | 67.6 | 0.58 | 8700.0 | -3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18.1_14721.t1 | gi|148227366|ref|NP_001091538.1| | protein CASC3 [Bos taurus] | 1.0e-26 |
Transcript
| Transcript ID | pfu_aug1.0_18.1_14721.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18.1_14721.t1 atgaaagagtcagaagtatctgaatatgaaagtactagtgagacccgaggagttgaggaagaagaagaggaagaagaaga agacgacgatgacgatgaatatgaaacagaagaagaagaagaagtagatgacgacgatgatgatgatgatgacacatatg atggagaagatgaagatgtgatcattgaagatgaaattgaagaccttttagatggagaaaggcagagtggagatggacag gaacagccagatggggaaaatgtggatgacgatgaagataagaaaaatccggcgtacgtgccacgtaagggggcgtttta cgagcatgacatgagaattacaatggacaatcaagaggaggaagataagaagccaaagaaaaaactctggaaggactcgg acaaatggttacacgacagattcaatctggaccagcaggctcccaaatctcgagatgagataatcaccatgtatgggtat gacataaggagagcagataaaccacccgatggacctctagaaagtaacagacccagaggacgaaggtcacaacagaagcc aagactgagtgattttgtagaagaccgaactgcaagatatgttgaagaacaaaatgcctacaatagctatagcggcatga aggagagaaattatcatgattcggaggacggggattatgggaatattcgcggaagacgaggtggagggcgtagaggtcgt ggtggacgtggacgttataataatagccaagaatttcaagataggcgagaatatgtgaataatcaaaacagagaatttta tcgcaaggatgatcagggttataggggctcagccgaacgggagtttgaaagaaaagataatagaaaatttcaagatcagg atgccggcgattttagaaataatagaaaaaacttcgaaagtcaaaatagccgtaacgatagtgaaaaattcaggaatgat aggagaggatttcaggacaatagacctagccgacagggacagaattatgaacgtgatcatgatagtcaacaatatagtga gaatagaccacagtacaatgaacggaacagaacgcaatttaacgatggatttcaaaatgatcggagagatggaaataatt atgaggaaaattcctctcgttataaccagaatagacgtggtggttttaataaccgtgatggtcaagggcgacagaattac aatcgtgataggcaacagtttaatgataatagaccgcaatacaatgatagggacagaatgcaatataacgatccaagacc tcagttcaatgaaggacgtagaagttatgaaaatgaccggagaagaatcgacgagggaaggagaagttacgaacgggagt ttgaatcaacaagatatagaaatgacgataatcgtgaacagagaaatcgtgattttactgaggagagggcaagtagaggt cgaggtggatttggtagtgaagagaggggtggctttaggggtaggggtagaggagggagagatagggggagggatagaaa tgatagagggaagaggagagaagagagaaattatcctccacggcttcagagagcaaagcaatttaataatcaaaatgctg aatattcagaagactggaatgaggaagctacagttgattcaatgacgtcggaaaatagaccgccgttcccgttacctccg tctgttgaagagaagaaagtggcacctgtagctgaaattgtaaaacaagaagacttgaatattgttgtacagaatcaagg cgaacggaaatcatattcgaaggatcgtcgtgcaagatacgtagggaaaacacgggtgcaagataggccatcaaatgtgg aggagtatgaactagccaagatggcagaaaaggacgttgaaatgcaagattcagttgaaacacagaaaaatgttgaagat gaggtccatcaaacagaggggaaagcaatgcagaaacatgatccgaaccagcaaggtaaacccaaacgatactcctcaca acgacaacgtaatcagcccgatattccgtaccaggaacaagtggaaggcggacctaattattacaatcctgtagcaggag ccattccgtcaccgagagtatttgttccacctcaacctccgcaatcaggaagcgtttccatggcaacacaagtccctgtg atggcacctcgttataacacggcaggagtaatattcagtcctcctaatgcacctcccccgacattccaggtgcagccagt tgttccaattactggatttcctcctccgtcacaagtgccagcggctgcagtgtccttgccatcacctattcaatctggag caaatactcaacaggagatggtaaggggtggaaccacatattacgctccggacctccagtatgccgccgggccgcaacca caaaaacgacccacgagtggcaccacctactaccctccagagatgcagtataaaggatcgaagaggtcacccgtgcgacg accgaaagctgcaattccaattataaatccacaggatgtaaagggcaaaaagaagggaagtgaccaaggtggcaacatgg ataatgccccggaggtcctagaacctacctccccactagaagagcccacttccttggaagatgaccaaagtcaggataga gaagaggtgatggatgaatcaagtgaaatacttattgctgacggaggccaaaattcagagatggtagaaaatactgataa tctacagcaagttgaaggcagtaaatcagagccgcacttagacgatctggatgaagattctaatcgtgttacaatttccg atgctgataggtacacaatttgtgttaacgatgatctaaatttagatgatgtaagtgacggaaaagttgacgtacaggta gaagccgaaaatagaagtgcagattcaaatatatcaaatcaggaaagtagtgataaagtaatatcgttagacaatgtcgc ggacaatggtgtcatggtcgatgatgttatggagataaaaactgaaaaacccgaacatgctgacgttcaagaaaaagata caatggaaagtcaagttgatataaaatcagaaccattggatagttttgaagaagtacctaaaggtgatttggttaatata aaaacggagcaagttatggaagaagaagaagtagaagatgtcaaagtgaaaggagaagatgatagtttggaacctgatga ttttacagatgccaaagaaactttggacgaggaagagaagaaataa |
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Protein
| Protein ID | pfu_aug1.0_18.1_14721.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18.1_14721.t1 MKESEVSEYESTSETRGVEEEEEEEEEDDDDDEYETEEEEEVDDDDDDDDDTYDGEDEDVIIEDEIEDLLDGERQSGDGQ EQPDGENVDDDEDKKNPAYVPRKGAFYEHDMRITMDNQEEEDKKPKKKLWKDSDKWLHDRFNLDQQAPKSRDEIITMYGY DIRRADKPPDGPLESNRPRGRRSQQKPRLSDFVEDRTARYVEEQNAYNSYSGMKERNYHDSEDGDYGNIRGRRGGGRRGR GGRGRYNNSQEFQDRREYVNNQNREFYRKDDQGYRGSAEREFERKDNRKFQDQDAGDFRNNRKNFESQNSRNDSEKFRND RRGFQDNRPSRQGQNYERDHDSQQYSENRPQYNERNRTQFNDGFQNDRRDGNNYEENSSRYNQNRRGGFNNRDGQGRQNY NRDRQQFNDNRPQYNDRDRMQYNDPRPQFNEGRRSYENDRRRIDEGRRSYEREFESTRYRNDDNREQRNRDFTEERASRG RGGFGSEERGGFRGRGRGGRDRGRDRNDRGKRREERNYPPRLQRAKQFNNQNAEYSEDWNEEATVDSMTSENRPPFPLPP SVEEKKVAPVAEIVKQEDLNIVVQNQGERKSYSKDRRARYVGKTRVQDRPSNVEEYELAKMAEKDVEMQDSVETQKNVED EVHQTEGKAMQKHDPNQQGKPKRYSSQRQRNQPDIPYQEQVEGGPNYYNPVAGAIPSPRVFVPPQPPQSGSVSMATQVPV MAPRYNTAGVIFSPPNAPPPTFQVQPVVPITGFPPPSQVPAAAVSLPSPIQSGANTQQEMVRGGTTYYAPDLQYAAGPQP QKRPTSGTTYYPPEMQYKGSKRSPVRRPKAAIPIINPQDVKGKKKGSDQGGNMDNAPEVLEPTSPLEEPTSLEDDQSQDR EEVMDESSEILIADGGQNSEMVENTDNLQQVEGSKSEPHLDDLDEDSNRVTISDADRYTICVNDDLNLDDVSDGKVDVQV EAENRSADSNISNQESSDKVISLDNVADNGVMVDDVMEIKTEKPEHADVQEKDTMESQVDIKSEPLDSFEEVPKGDLVNI KTEQVMEEEEVEDVKVKGEDDSLEPDDFTDAKETLDEEEKK |
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