Gene
| Gene Model ID | pfu_aug1.0_18046.1_25694 |
|---|---|
| Locus | scaffold18046.1 : 11234 ... 18025 : - |
| To GenomeBrowser | scaffold18046.1:11234..18025 |
| Genes list of scaffold | scaffold18046.1 |
| Synonym | pfu_aug2.0_28.1_26687 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18046.1_25694.t1 | 1 | 1 | Cor1 | 40 | 109 | 1.8e-24 | 85.9 | 1.1e-27 | 2.7e-24 | 85.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18046.1_25694.t1 | gi|168693567|ref|NP_001108302.1| | synaptonemal complex protein 3 [Xenopus laevis] | 4.0e-27 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| >Adult tissues | |
| maleGonad | 2 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_18046.1_25694.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18046.1_25694.t1 atgagagatcgtgaaacaccaatagtacctagagctgcaaagaaacgaccagtggaagaggaacaagattttggttctga gatgcagaagatgttggaagggttcggagctgacatttcaaaaacattggttcagaaaaggaaaagactagagtctttca ctcaaaactctctgaaatcatcaaacagaaaagtggatgaaatttggaaaattcaacaaacagaaaggaacaaacttcat gatgaatactgcagacaagtcagtacagttttccaacagtgggaggcagatcttgagaaaacaaaggagcaagaagaaaa gcttacagtaattgattccagtctttttagctcacctgagcaacttagctcaagtgagctattgccatag |
|
Protein
| Protein ID | pfu_aug1.0_18046.1_25694.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18046.1_25694.t1 MRDRETPIVPRAAKKRPVEEEQDFGSEMQKMLEGFGADISKTLVQKRKRLESFTQNSLKSSNRKVDEIWKIQQTERNKLH DEYCRQVSTVFQQWEADLEKTKEQEEKLTVIDSSLFSSPEQLSSSELLP |
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