pfu_aug1.0_18075.1_47172: Genome browser

Gene

Gene Model ID	pfu_aug1.0_18075.1_47172
Locus	scaffold18075.1 : 9296 ... 15913 : +
To GenomeBrowser	scaffold18075.1:9296..15913
Genes list of scaffold	scaffold18075.1
Synonym	pfu_aug2.0_30.1_00094

Manual annotation

Hmmer Search for Pfam

query	Total	ID	Target	From	To	Eval	Score	cEval	iEval	Score
pfu_aug1.0_18075.1_47172.t1	11	1	LRR_1	106	121	3.8e-18	62.7	0.065	110.0	3.4
pfu_aug1.0_18075.1_47172.t1	8	1	LRR_8	107	148	0.0	180.3	8.3e-08	0.00014	21.5
pfu_aug1.0_18075.1_47172.t1	12	1	LRR_4	107	138	1.1e-33	114.2	0.031	51.0	3.6
pfu_aug1.0_18075.1_47172.t1	4	1	LRR_5	109	219	1.3e-23	83.1	2.1e-09	3.5e-06	26.7
pfu_aug1.0_18075.1_47172.t1	11	2	LRR_1	125	145	3.8e-18	62.7	0.01	17.0	5.9
pfu_aug1.0_18075.1_47172.t1	8	2	LRR_8	126	179	0.0	180.3	3.6e-07	0.00059	19.5
pfu_aug1.0_18075.1_47172.t1	12	2	LRR_4	167	179	1.1e-33	114.2	0.01	17.0	5.1
pfu_aug1.0_18075.1_47172.t1	7	1	LRR_6	170	179	1.0e-06	28.1	0.91	1500.0	-0.2
pfu_aug1.0_18075.1_47172.t1	9	1	LRR_7	171	179	6.2e-09	34.6	0.98	1600.0	0.2
pfu_aug1.0_18075.1_47172.t1	8	3	LRR_8	198	252	0.0	180.3	1.2e-06	0.002	17.8
pfu_aug1.0_18075.1_47172.t1	12	3	LRR_4	198	230	1.1e-33	114.2	0.0012	1.9	8.1
pfu_aug1.0_18075.1_47172.t1	12	4	LRR_4	248	287	1.1e-33	114.2	2.9e-08	4.8e-05	22.8
pfu_aug1.0_18075.1_47172.t1	4	2	LRR_5	253	293	1.3e-23	83.1	1.1e-05	0.017	14.7
pfu_aug1.0_18075.1_47172.t1	8	4	LRR_8	258	303	0.0	180.3	1.2e-11	1.9e-08	33.9
pfu_aug1.0_18075.1_47172.t1	9	2	LRR_7	270	285	6.2e-09	34.6	0.0022	3.7	8.1
pfu_aug1.0_18075.1_47172.t1	7	2	LRR_6	270	285	1.0e-06	28.1	0.00039	0.64	10.2
pfu_aug1.0_18075.1_47172.t1	11	3	LRR_1	271	291	3.8e-18	62.7	0.00013	0.22	11.7
pfu_aug1.0_18075.1_47172.t1	12	5	LRR_4	296	337	1.1e-33	114.2	3.1e-05	0.051	13.2
pfu_aug1.0_18075.1_47172.t1	8	5	LRR_8	318	357	0.0	180.3	8.4e-11	1.4e-07	31.1
pfu_aug1.0_18075.1_47172.t1	4	3	LRR_5	319	412	1.3e-23	83.1	2.1e-08	3.4e-05	23.5
pfu_aug1.0_18075.1_47172.t1	7	3	LRR_6	321	332	1.0e-06	28.1	0.12	200.0	2.5
pfu_aug1.0_18075.1_47172.t1	12	6	LRR_4	322	361	1.1e-33	114.2	4.0e-08	6.6e-05	22.4
pfu_aug1.0_18075.1_47172.t1	11	4	LRR_1	322	343	3.8e-18	62.7	0.00027	0.45	10.7
pfu_aug1.0_18075.1_47172.t1	9	3	LRR_7	322	337	6.2e-09	34.6	0.027	45.0	4.8
pfu_aug1.0_18075.1_47172.t1	12	7	LRR_4	346	385	1.1e-33	114.2	3.1e-08	5.1e-05	22.7
pfu_aug1.0_18075.1_47172.t1	11	5	LRR_1	346	368	3.8e-18	62.7	0.02	33.0	5.0
pfu_aug1.0_18075.1_47172.t1	9	4	LRR_7	346	359	6.2e-09	34.6	0.52	850.0	1.0
pfu_aug1.0_18075.1_47172.t1	8	6	LRR_8	347	403	0.0	180.3	4.5e-16	7.4e-13	48.0
pfu_aug1.0_18075.1_47172.t1	7	4	LRR_6	368	383	1.0e-06	28.1	0.001	1.7	8.9
pfu_aug1.0_18075.1_47172.t1	12	8	LRR_4	370	406	1.1e-33	114.2	3.9e-05	0.064	12.9
pfu_aug1.0_18075.1_47172.t1	11	6	LRR_1	370	389	3.8e-18	62.7	0.0018	3.0	8.2
pfu_aug1.0_18075.1_47172.t1	9	5	LRR_7	370	384	6.2e-09	34.6	0.0036	5.9	7.5
pfu_aug1.0_18075.1_47172.t1	11	7	LRR_1	395	408	3.8e-18	62.7	0.17	280.0	2.2
pfu_aug1.0_18075.1_47172.t1	9	6	LRR_7	395	407	6.2e-09	34.6	0.28	460.0	1.8
pfu_aug1.0_18075.1_47172.t1	8	7	LRR_8	425	466	0.0	180.3	0.00025	0.41	10.4
pfu_aug1.0_18075.1_47172.t1	12	9	LRR_4	425	467	1.1e-33	114.2	1.4e-06	0.0023	17.4
pfu_aug1.0_18075.1_47172.t1	7	5	LRR_6	448	463	1.0e-06	28.1	0.49	810.0	0.6
pfu_aug1.0_18075.1_47172.t1	12	10	LRR_4	449	490	1.1e-33	114.2	2.1e-09	3.5e-06	26.4
pfu_aug1.0_18075.1_47172.t1	9	7	LRR_7	450	465	6.2e-09	34.6	0.18	300.0	2.4
pfu_aug1.0_18075.1_47172.t1	11	8	LRR_1	451	468	3.8e-18	62.7	0.035	57.0	4.3
pfu_aug1.0_18075.1_47172.t1	4	4	LRR_5	463	529	1.3e-23	83.1	2.3e-05	0.037	13.7
pfu_aug1.0_18075.1_47172.t1	7	6	LRR_6	472	487	1.0e-06	28.1	0.005	8.2	6.8
pfu_aug1.0_18075.1_47172.t1	12	11	LRR_4	473	514	1.1e-33	114.2	3.9e-07	0.00064	19.2
pfu_aug1.0_18075.1_47172.t1	8	8	LRR_8	474	534	0.0	180.3	5.3e-13	8.7e-10	38.2
pfu_aug1.0_18075.1_47172.t1	11	9	LRR_1	474	490	3.8e-18	62.7	0.00088	1.5	9.1
pfu_aug1.0_18075.1_47172.t1	9	8	LRR_7	474	488	6.2e-09	34.6	0.0053	8.8	7.0
pfu_aug1.0_18075.1_47172.t1	11	10	LRR_1	502	521	3.8e-18	62.7	0.17	290.0	2.2
pfu_aug1.0_18075.1_47172.t1	12	12	LRR_4	503	541	1.1e-33	114.2	8.3e-08	0.00014	21.4
pfu_aug1.0_18075.1_47172.t1	7	7	LRR_6	521	537	1.0e-06	28.1	0.0077	13.0	6.2
pfu_aug1.0_18075.1_47172.t1	9	9	LRR_7	523	535	6.2e-09	34.6	0.023	38.0	5.1
pfu_aug1.0_18075.1_47172.t1	11	11	LRR_1	524	536	3.8e-18	62.7	0.006	9.8	6.6

Blast Hit to nr / sp

query	Subject ID	Subject Name	evalue
pfu_aug1.0_18075.1_47172.t1	gi\|320165725\|gb\|EFW42624.1\|		4.0e-28

Expression profile

(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries	EST count
>Embryonic/Larval stages
mix	1
>Adult tissues

Transcript

Transcript ID	pfu_aug1.0_18075.1_47172.t1
Definition	-
>pfu_aug1.0_18075.1_47172.t1 atgatcgggacccagtcttttccgacgaggtttggacaagattcaccatggagtcaaagtcaggataccacccacataat gcgtgtgttcctgcttatctgcatttgcatcacatataactacgtgacatgcgccgacccatgccccgtcccccgagggg cgaggtgtaattgtgagtccggacccccgggaaaaggacgaatcatcaactgcagggatggtcgatttagaagtatcccc gccttcctgccttctaacgaagtcttctacgagttgaccttcagtaatagttttgaccccatggcggggaattgcgtgtc gtgtaataggataaataccattccagctaatgcgttttcgggtatcaaattccaggccctggatataagccgtaacccca tgaaggaggtgtccgacagtgcttttaatggtctggagagtgtcctgaccaacattataatagagggggataaagtcatg gctcctccctataacgccttctcccgcctccagaacctccgcagtctgtcccttaggagatttgcccagggtgttataag gagagataatacgaatgtggatcctttgataaacttggagaccctcgagatgaagcagatggatgttgaagaaataaaac cagacgcgtttgttaaccgcttaccaagtctcaaaaagctggtacttgagtacctgccaatgaagtttttccctacagaa gggctaagagccttgagaatgttggaacacctatcagcaatatatgttgacctaacaaccgttccaacaggagcgttcca gaatttcacaaatctgaaggagcttatactttctcacaacaaaatcagcaaactagaaccagattgttttaatggtatcc aggatactttggaatacctaggtttacaactgaacgctttaagtactgctagggtccaggaactggccgggtaccgatgg agtaaacttgaacaactgaatcttggccataacagcatggtggacattccgagaggactcttctacaacatgcgcaaact ggcctatctgcagctggattcaaacagaatttcacgaatcaaccaacatgatttccagggactgcagaatcttatattct tggacttatcctacaataagctggagggcatcgatcaaggcactttcatgaatactccaattctccgagaattggacctt agaggagaaaatacgttgacacgggctcgagtgtttaaccttgacgcatacagtctgatgggactaagtcaaagtctaga gaagctcgtactgacagattccgttttggatgaacagaaattgtggtctgcgttgaaaaggttgaagaatgtggtagttc ttgagcttggaggaacaggactgacggacatacccgatctgcaatttatttacaacaagaaactgaagtatctgatgctt gaaaacaataacctgacatccatatcccaaatgaagctagccggactcgaggacactgtagtcaatataaatctccagag aaataaggttcagcaaatagaaaagtgcgcttttggacagctgaaagcactgcaaacgttatacctaggaggcaaccctc tgaaatgtgactgcagtgcattatggctgcacgaatggatcgaggaacagaaggcaaaagatccctttattgaaatcctt acaaacgcaaattgtgatgacggtaaagctttgacctcgttgacgaaacagaacttgtgtccctatgacgtggtagacga tacttgcatagaatattcagagatcaccacaccatacaccgaccccaccaccacggcaccaatcgtcaccgcagcaccac ctgttaccggcaagaatttcagattccgacaaattattgagcaagcaaattccaaggacagccgcgagaaataa

Transcript ID

pfu_aug1.0_18075.1_47172.t1

Definition

>pfu_aug1.0_18075.1_47172.t1
atgatcgggacccagtcttttccgacgaggtttggacaagattcaccatggagtcaaagtcaggataccacccacataat
gcgtgtgttcctgcttatctgcatttgcatcacatataactacgtgacatgcgccgacccatgccccgtcccccgagggg
cgaggtgtaattgtgagtccggacccccgggaaaaggacgaatcatcaactgcagggatggtcgatttagaagtatcccc
gccttcctgccttctaacgaagtcttctacgagttgaccttcagtaatagttttgaccccatggcggggaattgcgtgtc
gtgtaataggataaataccattccagctaatgcgttttcgggtatcaaattccaggccctggatataagccgtaacccca
tgaaggaggtgtccgacagtgcttttaatggtctggagagtgtcctgaccaacattataatagagggggataaagtcatg
gctcctccctataacgccttctcccgcctccagaacctccgcagtctgtcccttaggagatttgcccagggtgttataag
gagagataatacgaatgtggatcctttgataaacttggagaccctcgagatgaagcagatggatgttgaagaaataaaac
cagacgcgtttgttaaccgcttaccaagtctcaaaaagctggtacttgagtacctgccaatgaagtttttccctacagaa
gggctaagagccttgagaatgttggaacacctatcagcaatatatgttgacctaacaaccgttccaacaggagcgttcca
gaatttcacaaatctgaaggagcttatactttctcacaacaaaatcagcaaactagaaccagattgttttaatggtatcc
aggatactttggaatacctaggtttacaactgaacgctttaagtactgctagggtccaggaactggccgggtaccgatgg
agtaaacttgaacaactgaatcttggccataacagcatggtggacattccgagaggactcttctacaacatgcgcaaact
ggcctatctgcagctggattcaaacagaatttcacgaatcaaccaacatgatttccagggactgcagaatcttatattct
tggacttatcctacaataagctggagggcatcgatcaaggcactttcatgaatactccaattctccgagaattggacctt
agaggagaaaatacgttgacacgggctcgagtgtttaaccttgacgcatacagtctgatgggactaagtcaaagtctaga
gaagctcgtactgacagattccgttttggatgaacagaaattgtggtctgcgttgaaaaggttgaagaatgtggtagttc
ttgagcttggaggaacaggactgacggacatacccgatctgcaatttatttacaacaagaaactgaagtatctgatgctt
gaaaacaataacctgacatccatatcccaaatgaagctagccggactcgaggacactgtagtcaatataaatctccagag
aaataaggttcagcaaatagaaaagtgcgcttttggacagctgaaagcactgcaaacgttatacctaggaggcaaccctc
tgaaatgtgactgcagtgcattatggctgcacgaatggatcgaggaacagaaggcaaaagatccctttattgaaatcctt
acaaacgcaaattgtgatgacggtaaagctttgacctcgttgacgaaacagaacttgtgtccctatgacgtggtagacga
tacttgcatagaatattcagagatcaccacaccatacaccgaccccaccaccacggcaccaatcgtcaccgcagcaccac
ctgttaccggcaagaatttcagattccgacaaattattgagcaagcaaattccaaggacagccgcgagaaataa

Protein

Protein ID	pfu_aug1.0_18075.1_47172.t1
Definition	-
>pfu_aug1.0_18075.1_47172.t1 MIGTQSFPTRFGQDSPWSQSQDTTHIMRVFLLICICITYNYVTCADPCPVPRGARCNCESGPPGKGRIINCRDGRFRSIP AFLPSNEVFYELTFSNSFDPMAGNCVSCNRINTIPANAFSGIKFQALDISRNPMKEVSDSAFNGLESVLTNIIIEGDKVM APPYNAFSRLQNLRSLSLRRFAQGVIRRDNTNVDPLINLETLEMKQMDVEEIKPDAFVNRLPSLKKLVLEYLPMKFFPTE GLRALRMLEHLSAIYVDLTTVPTGAFQNFTNLKELILSHNKISKLEPDCFNGIQDTLEYLGLQLNALSTARVQELAGYRW SKLEQLNLGHNSMVDIPRGLFYNMRKLAYLQLDSNRISRINQHDFQGLQNLIFLDLSYNKLEGIDQGTFMNTPILRELDL RGENTLTRARVFNLDAYSLMGLSQSLEKLVLTDSVLDEQKLWSALKRLKNVVVLELGGTGLTDIPDLQFIYNKKLKYLML ENNNLTSISQMKLAGLEDTVVNINLQRNKVQQIEKCAFGQLKALQTLYLGGNPLKCDCSALWLHEWIEEQKAKDPFIEIL TNANCDDGKALTSLTKQNLCPYDVVDDTCIEYSEITTPYTDPTTTAPIVTAAPPVTGKNFRFRQIIEQANSKDSREK

Protein ID

pfu_aug1.0_18075.1_47172.t1

Definition

>pfu_aug1.0_18075.1_47172.t1
MIGTQSFPTRFGQDSPWSQSQDTTHIMRVFLLICICITYNYVTCADPCPVPRGARCNCESGPPGKGRIINCRDGRFRSIP
AFLPSNEVFYELTFSNSFDPMAGNCVSCNRINTIPANAFSGIKFQALDISRNPMKEVSDSAFNGLESVLTNIIIEGDKVM
APPYNAFSRLQNLRSLSLRRFAQGVIRRDNTNVDPLINLETLEMKQMDVEEIKPDAFVNRLPSLKKLVLEYLPMKFFPTE
GLRALRMLEHLSAIYVDLTTVPTGAFQNFTNLKELILSHNKISKLEPDCFNGIQDTLEYLGLQLNALSTARVQELAGYRW
SKLEQLNLGHNSMVDIPRGLFYNMRKLAYLQLDSNRISRINQHDFQGLQNLIFLDLSYNKLEGIDQGTFMNTPILRELDL
RGENTLTRARVFNLDAYSLMGLSQSLEKLVLTDSVLDEQKLWSALKRLKNVVVLELGGTGLTDIPDLQFIYNKKLKYLML
ENNNLTSISQMKLAGLEDTVVNINLQRNKVQQIEKCAFGQLKALQTLYLGGNPLKCDCSALWLHEWIEEQKAKDPFIEIL
TNANCDDGKALTSLTKQNLCPYDVVDDTCIEYSEITTPYTDPTTTAPIVTAAPPVTGKNFRFRQIIEQANSKDSREK

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OIST Marine Genomics Unit since 2008