Gene
| Gene Model ID | pfu_aug1.0_18149.1_47182 |
|---|---|
| Locus | scaffold18149.1 : 649 ... 5365 : - |
| To GenomeBrowser | scaffold18149.1:649..5365 |
| Genes list of scaffold | scaffold18149.1 |
| Synonym | pfu_aug2.0_2055.1_18664 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18149.1_47182.t1 | 1 | 1 | rve | 844 | 955 | 5.0e-22 | 78.2 | 1.2e-24 | 2.6e-21 | 75.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18149.1_47182.t1 | gi|339258158|ref|XP_003369265.1| | putative integrase core domain protein [Trichinella spiralis] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_18149.1_47182.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18149.1_47182.t1 atgaattcaccaacatctgggaacatgagtaccagtaatgtgccagtaaagcgtactttcagtggtgacagcagagacac ttggtctgaattcataaggtacagttccttgaataattgggatgaagatagaaaacggaagatcttcttcactgttctca ggggccaagctgaatcgtttgcatacggacttccagatgaagagagaaacagttggattgctttgaagggaaggatgaat gataggtttggacaccatacaatgaaggattatattgccgaggcaaggcttcgcactaagacatcatcggaatcattcag agattttggacaagcgcttgaagatttatatcgtagatcatatccaaacaatcgtgaatatattgccgagagcagtatga agatttttatagacaattgcagcgaacgagaagactttagattagctgtaaagggaactcgaccaaagacattacaagat gctgttacggctgcaatgcaagaagaatacatcagagtaagtgaaagccgtaagtctgatatgcaaaaggacatacgaag gccagtttttgcattaaaacatgatgcgcgggaaaactatggacctttcgaaaatagacagaacctcaagttccaagaca aatcatcgaatgaaagccgaagtgcagaaaataagaacattgataaatgtgatagtttggaacatagaagagtttccgag tctgaaatttcttctgctcatatgtctatgacgagtttcatttctacacctgatagtgaatgtggttcaaagaaaagtgt ttcttctgattctgatagttttaaaatctatagccttaatgtgaaaaggagatctggaatgatcatggatgggcttatag aaggtagtccaatagaatggaagatggatacaggagccagtagaacattcataactgaagatacgtattacagtattctt ccaattacaaggccgagtctgcaagaagtgcggaacaaatttgaaacagcggacgggagtaaattgaatctacttggaac tgcgtttatgactttgacatttggaaattcttgtgtgattttgagagtatatgtaggtggagtaaagtgtaacctacttg gacaggatttcttatcaatgtttaagtgcaactgggattacgagacgaatcatcttgtgatgaacatagatctaaggata agtgaaacccccgacgatgtgtgtgttgttatgtttaaagaaaacacatatgtgccttccggttgtgaaacagtgataaa ggctagtttaaaaggaaaaccgacgtgttgtcagggaatgttacttcaatttaaacggtttgtgcattctcatggcttaa ttgtggctctacagatcatgaatacacaaaatgatattgtgtttgtgcgagtgtataatgctgatgtttcagatgtttgg ataaataaacacactgaaatagctcaagtgataactgtgaatttcatcagtgagcctatggaatcatgtagtgctactga agtgaagcgaaacggaaattccggagaattacccgatcacttatacgagttatatgatgacggttgtagggagttgtcac atgaagaagcgatgaagtttaaggaattcctgatagagaggaaagattcctttgctgttcctggagagaaaatggaacgt gcgactatcggggagcatgtaanggagaggaggattatatcagtatacgctgtactgtacctcgatgacatcatagtgta cggaggtaaaacattcgatgggcacttggataattcaaacctagtgttggatcaattaaaggccgttaacctcaagttaa aagctaaaaagtgtagtttctttaagaaggaagttacatttccgggccatatcgtatctcagaagggaattatgacagat cgcaataaagtagatgctgtcaggaactggaaaagacccgaaagcgttagtgaattaagaagctttctgggcttagctac gtactacagacgattcatcaaagactttgcaaaaacagcttcgtgtttacacgcattgactagcaagaataataagtgga tgtggaccactgaatgtgaattttcatttcgaactttgaaagaaaagttaacatcggctccaattcttggttatccatac gtaaatggcggtagcttcattttggacgtggatgccagtgataatgcaataggtgctgttttgtcccagatacaagataa tgatgagagagttattgcgtatggaagcagaacactaacaagggcggagaagaactattgtgtaacacggaaacgccacg gcaacgctgatgcgttatcacgcttgagtgagaattcgaagatttgcaagcaatgtaactttgatttagacaaaaagggt gaagaagaaaaagagattttaactcacagtgaagatttgaaattattacggaaattagacagtgatgatgaagacgcgtc tcaaagtaatagaaaaaccgaagatcaagacgatgacttgattgagatacgacgaatcgctatggatattgctggaccgt ttccgaaaacgagagatggaaattcatacattcttgtgatagcggattacttcacaaagttcacagaaatatttccgata cgaaatattgaagccgaagctgtgaccgagactgtgtttaaaggatggataaagagatacggatgtccccaggaaattca ttcggatcaaggcgcgaaattcgaaagtcaagttttccaggagatgtgccgttttcttaaattgaataaaacacggacta caccctaccaccctaggtctgacggaatggtcgaacgccttaatcgaactatcaaagatatgatagcaaaatatgtaagt gcgaatcaaacggactgggaccgttatatagatggacttatacttgcttacaatacatcatcgcacgaatcaacaggaac aacacccattagacttgtgtttggtactgaatgtacagttccgattgacattataactccaaagttagaagaggacgaac agtccgaatatttgaatgcatcggaatttgtgcgtaacttagacaaacagttcgctaaaataaatgaaatagcgaggaga actgcttaa |
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Protein
| Protein ID | pfu_aug1.0_18149.1_47182.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18149.1_47182.t1 MNSPTSGNMSTSNVPVKRTFSGDSRDTWSEFIRYSSLNNWDEDRKRKIFFTVLRGQAESFAYGLPDEERNSWIALKGRMN DRFGHHTMKDYIAEARLRTKTSSESFRDFGQALEDLYRRSYPNNREYIAESSMKIFIDNCSEREDFRLAVKGTRPKTLQD AVTAAMQEEYIRVSESRKSDMQKDIRRPVFALKHDARENYGPFENRQNLKFQDKSSNESRSAENKNIDKCDSLEHRRVSE SEISSAHMSMTSFISTPDSECGSKKSVSSDSDSFKIYSLNVKRRSGMIMDGLIEGSPIEWKMDTGASRTFITEDTYYSIL PITRPSLQEVRNKFETADGSKLNLLGTAFMTLTFGNSCVILRVYVGGVKCNLLGQDFLSMFKCNWDYETNHLVMNIDLRI SETPDDVCVVMFKENTYVPSGCETVIKASLKGKPTCCQGMLLQFKRFVHSHGLIVALQIMNTQNDIVFVRVYNADVSDVW INKHTEIAQVITVNFISEPMESCSATEVKRNGNSGELPDHLYELYDDGCRELSHEEAMKFKEFLIERKDSFAVPGEKMER ATIGEHVXERRIISVYAVLYLDDIIVYGGKTFDGHLDNSNLVLDQLKAVNLKLKAKKCSFFKKEVTFPGHIVSQKGIMTD RNKVDAVRNWKRPESVSELRSFLGLATYYRRFIKDFAKTASCLHALTSKNNKWMWTTECEFSFRTLKEKLTSAPILGYPY VNGGSFILDVDASDNAIGAVLSQIQDNDERVIAYGSRTLTRAEKNYCVTRKRHGNADALSRLSENSKICKQCNFDLDKKG EEEKEILTHSEDLKLLRKLDSDDEDASQSNRKTEDQDDDLIEIRRIAMDIAGPFPKTRDGNSYILVIADYFTKFTEIFPI RNIEAEAVTETVFKGWIKRYGCPQEIHSDQGAKFESQVFQEMCRFLKLNKTRTTPYHPRSDGMVERLNRTIKDMIAKYVS ANQTDWDRYIDGLILAYNTSSHESTGTTPIRLVFGTECTVPIDIITPKLEEDEQSEYLNASEFVRNLDKQFAKINEIARR TA |
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