Gene
| Gene Model ID | pfu_aug1.0_18185.1_32891 |
|---|---|
| Locus | scaffold18185.1 : 24 ... 10992 : + |
| To GenomeBrowser | scaffold18185.1:24..10992 |
| Genes list of scaffold | scaffold18185.1 |
| Synonym | pfu_aug2.0_988.1_27958 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-SREBP |
| Description | Best hit to BAG61752 unnamed protein product [Homo sapiens] by a BLASTP search against NCBI Homo sapiens nr database. This annotation is based on NJ, ML, and BI. pfudmixc33623g10204 was used for analyses. |
| mRNA evidence | pfudmixc33623g10204 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18185.1_32891.t1 | gi|260832924|ref|XP_002611407.1| | hypothetical protein BRAFLDRAFT_117231 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_18185.1_32891.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18185.1_32891.t1 atgtttcctacgttgttattatgggtgatgaacggacttattgtagctggggtaatggcaaaactcttcatctttggtga acctgtggtcaagaagaatagttttacagctgttacattctacagacacctggctcaagcagatactcatctggaaaaag gaaattattcctgggctacagaccaactgagtcgagctctagcttgtataggaagaccattacccacctctaacttggac ttggtgtctggacttgcttggaacttgttacgttcattgacccacaggctgttctggggaaaatggctgtttaggaaggc tggcttgttgagaagtaactctgatgaggatgtgaaaacatcagctgttaatgcagctttagcgtaccacaaactcaatc aaatgcacctgacaggtaatgtaccggggagtacgtggtggggattatacatcactttgaatgctgtaaatctggcagaa gctgctggaaataccatgcctttaacacagctggcagaggtgtatgccatggcggcattaagtgtcaaaattggacttcc ttggaaattgcagtatttggctagatatttcctcagtagatgtcgtcgtgcattttctaagagtggagaccagctgccac ctaaccttcagtggctatctcacccagaaggatatcgctttttcgtcggtggcaaatggcacatgggtggcaaagacagc ctcttcactaccatagggaatccagcggatccattagaacatgtggcccagatgtacagggatcatctattggagaaggg tatgttctccctggtaactccagagaagaggaaaccagccggtccctcccaggctgcggaggtgttactatatacacagc tcctatccgatagtgcttcaactacgaaaacaagccactccaacatgtctccatcagggattactaatattgctggttct gatgaagtagccagatggtgggcagccattataacggtggccattcattggttgactggtgatgatgaaaatgcagaaaa tcattacatcatatgtgattcatttcctcagaaactacagaaatcagatgatcctctccctaaggcagttttggttgctt tccgagccaggagaaacctgattacaaattcccataatgcttcacactgcatacgacaatgtgacagagcaggaagaatg ctgagggaaagcctgaagctctcatattcccaggaaaatgagcagatagcaaagctaagtgttacgcaacatcgttatgt aatatttccggtcatgtgccgagcttccctaaggtcaataacggcgaacttcgtttag |
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Protein
| Protein ID | pfu_aug1.0_18185.1_32891.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18185.1_32891.t1 MFPTLLLWVMNGLIVAGVMAKLFIFGEPVVKKNSFTAVTFYRHLAQADTHLEKGNYSWATDQLSRALACIGRPLPTSNLD LVSGLAWNLLRSLTHRLFWGKWLFRKAGLLRSNSDEDVKTSAVNAALAYHKLNQMHLTGNVPGSTWWGLYITLNAVNLAE AAGNTMPLTQLAEVYAMAALSVKIGLPWKLQYLARYFLSRCRRAFSKSGDQLPPNLQWLSHPEGYRFFVGGKWHMGGKDS LFTTIGNPADPLEHVAQMYRDHLLEKGMFSLVTPEKRKPAGPSQAAEVLLYTQLLSDSASTTKTSHSNMSPSGITNIAGS DEVARWWAAIITVAIHWLTGDDENAENHYIICDSFPQKLQKSDDPLPKAVLVAFRARRNLITNSHNASHCIRQCDRAGRM LRESLKLSYSQENEQIAKLSVTQHRYVIFPVMCRASLRSITANFV |
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