Gene
| Gene Model ID | pfu_aug1.0_18201.1_61791 |
|---|---|
| Locus | scaffold18201.1 : 723 ... 11028 : + |
| To GenomeBrowser | scaffold18201.1:723..11028 |
| Genes list of scaffold | scaffold18201.1 |
| Synonym | pfu_aug2.0_31.1_03468 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18201.1_61791.t1 | 2 | 1 | C1_1 | 279 | 330 | 5.1e-08 | 32.5 | 6.9e-12 | 5.1e-08 | 32.5 |
| pfu_aug1.0_18201.1_61791.t1 | 2 | 2 | C1_1 | 340 | 361 | 5.1e-08 | 32.5 | 0.0091 | 67.0 | 3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18201.1_61791.t1 | gi|260833620|ref|XP_002611810.1| | hypothetical protein BRAFLDRAFT_103032 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_18201.1_61791.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18201.1_61791.t1 atggagagtgaagcaactgctgccaaggtaacctctgccgataacttgccaaagggaaagtgggacacagattcactgca gagtaaaggtggaacgagtaacataattcacagagtagaaacagagactgcatcaataaaattcacaggaaatattataa cagatcttgctgattctgaaaatgagctgagttcttcttcagaggtggattacatgataaaagatattgacttcaacaaa actgtcgagcctgttacggaatggaatgacgatttagaaataattgcagaaaaacaatcccaatcaattgcttttaagga gagcagggcaagatataacagttttgaagagcagggaattctgccaccagttggtagtaaagaaaaagacgggtcgtgga gagaggggaagagaccatccaagctgagtttgagcttcaaggaaaatcgttttaatccttttgacagagatttacacatg gaggaagaccattttcagaatgagaacaacagtgatgatagctataggaacaaatcaagttctaacggcagtggatcatg ggccaatatctcagcagacacggaggacgtgaccaatgcagacctaggtctagctgaagaccacttctctcatcctgagg gagcatttgggttgaccaatgaggaggagttagagatggtgattgacagctgtaaggccatgatagctgaagctccgccc aattctgacagagttaaaaatttggtccagaaactaatacagctcagactcaaactacaggagctgaaggaggggccacc cccagtaccaggtgacgtgaagccagttgttggtcatcgatttgtaattcagaaaagccgtagctccaagtattactgtg agaagtgtaacgccatgatactaggcgtcatacaaacttggtacaggtgtactgaatgtggatatagctgccatgagaag tgccttaataacatcacaaggacatgtgcaagtcagaaggttttggagaatccgacattttgcctgttgatttgtcctaa ccggggtctgtctgctcagaattacagatgtgctgaatgtcgcacacagatatcattta |
|
Protein
| Protein ID | pfu_aug1.0_18201.1_61791.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18201.1_61791.t1 MESEATAAKVTSADNLPKGKWDTDSLQSKGGTSNIIHRVETETASIKFTGNIITDLADSENELSSSSEVDYMIKDIDFNK TVEPVTEWNDDLEIIAEKQSQSIAFKESRARYNSFEEQGILPPVGSKEKDGSWREGKRPSKLSLSFKENRFNPFDRDLHM EEDHFQNENNSDDSYRNKSSSNGSGSWANISADTEDVTNADLGLAEDHFSHPEGAFGLTNEEELEMVIDSCKAMIAEAPP NSDRVKNLVQKLIQLRLKLQELKEGPPPVPGDVKPVVGHRFVIQKSRSSKYYCEKCNAMILGVIQTWYRCTECGYSCHEK CLNNITRTCASQKVLENPTFCLLICPNRGLSAQNYRCAECRTQISF |
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