Gene
Gene Model ID | pfu_aug1.0_18273.1_54476 |
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Locus | scaffold18273.1 : 1 ... 7125 : - |
To GenomeBrowser | scaffold18273.1:1..7125 |
Genes list of scaffold | scaffold18273.1 |
Synonym | pfu_aug2.0_2109.1_32052 |
Manual annotation
Study field | Metabolism |
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Gene name | UDP-glucose 4-epimerase |
Description | reciprocal BLASTP best hit to EGD78352.1 |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_18273.1_54476.t1 | 1 | 1 | adh_short | 4 | 134 | 1.5e-07 | 31.4 | 2.3e-10 | 3.1e-07 | 30.4 |
pfu_aug1.0_18273.1_54476.t1 | 1 | 1 | Epimerase | 6 | 254 | 0.0 | 163.5 | 0.0 | 0.0 | 163.2 |
pfu_aug1.0_18273.1_54476.t1 | 1 | 1 | Polysacc_synt_2 | 6 | 185 | 7.2e-12 | 44.7 | 6.1e-14 | 8.3e-11 | 41.3 |
pfu_aug1.0_18273.1_54476.t1 | 1 | 1 | RmlD_sub_bind | 6 | 179 | 1.3e-10 | 40.6 | 1.6e-13 | 2.2e-10 | 39.9 |
pfu_aug1.0_18273.1_54476.t1 | 1 | 1 | NAD_binding_10 | 6 | 198 | 1.8e-09 | 37.8 | 2.0e-12 | 2.7e-09 | 37.2 |
pfu_aug1.0_18273.1_54476.t1 | 1 | 1 | 3Beta_HSD | 7 | 161 | 8.3e-13 | 47.6 | 1.2e-15 | 1.6e-12 | 46.6 |
pfu_aug1.0_18273.1_54476.t1 | 1 | 1 | NAD_binding_4 | 8 | 194 | 3.8e-10 | 39.1 | 1.3e-11 | 1.8e-08 | 33.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_18273.1_54476.t1 |
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Definition | - |
>pfu_aug1.0_18273.1_54476.t1 atgagtaaagggagtatactcctgacaggaggggcggggtttgtaggcagccatactgtaatagagtttatccaagcagg atattctgttgtagtcttggacaaccttgtcaatgcaagcatggagagcataaaacgagttgaaaaaataacaggtaaag aaattccagccgtcaatgtggatttactgaacaaagaggcattaacagatttattttctaaacacaagtttactagcgtg gttcactttgccggcctgaaggctgttggagaatcttgtcagttacccctcctttactaccatactaatataggagcaac catcaatctgttagaggtgatgaaatcttttgatgtgaagaatatgattttctcaagttctgccactgtatacggtactc cgcagtatttacctatagacgaaaaacatcctgttggtggctgtaccaacccatacggcaaaacaaaatacttcattgaa gaaatcctcagagacctagccaaggcagaacctgactggaacattgttatacttcgttactttaatcctgtgggggccca tgagtctggtcaaataggtgaggatccacagggtgtgcccaataatcttatgccatttatctcacaagtagccgtaggta aaaggaaggaattgaacgtttacggtgatgattacgacacacctgatggtacaggagtaagagactatatacatgtggtg gatttagctaaaggtcatgtggcagctcagacaaaaatagaaactaaatgtggatgtaaggtgagttaa |
Protein
Protein ID | pfu_aug1.0_18273.1_54476.t1 |
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Definition | - |
>pfu_aug1.0_18273.1_54476.t1 MSKGSILLTGGAGFVGSHTVIEFIQAGYSVVVLDNLVNASMESIKRVEKITGKEIPAVNVDLLNKEALTDLFSKHKFTSV VHFAGLKAVGESCQLPLLYYHTNIGATINLLEVMKSFDVKNMIFSSSATVYGTPQYLPIDEKHPVGGCTNPYGKTKYFIE EILRDLAKAEPDWNIVILRYFNPVGAHESGQIGEDPQGVPNNLMPFISQVAVGKRKELNVYGDDYDTPDGTGVRDYIHVV DLAKGHVAAQTKIETKCGCKVS |