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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_1837.1_08144
Locus scaffold1837.1 : 59610 ... 80625 : -
To GenomeBrowser scaffold1837.1:59610..80625
Genes list of scaffold scaffold1837.1
Synonym pfu_aug2.0_179.1_30360

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_1837.1_08144.t1 1 1 zf-CHCC 87 114 3.2e-08 33.2 3.4e-12 5.0e-08 32.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_1837.1_08144.t1 gi|260908491|gb|ACX53965.1| 5.0e-23

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
egg-4cell 2
trochophore 1
>Adult tissues
mantleEdge 1
mantlePallium 1
pearlSac 1

Transcript
Transcript IDpfu_aug1.0_1837.1_08144.t1
Definition-
>pfu_aug1.0_1837.1_08144.t1
atggcccttgcaaggacattcgttagatcagcaacaattcggacacttgcacgactttcctcgtcatctgccaaacatgt
gaccgatggtgaaaacgtagatgttacaactcacaccggacaggtttgggacaaagaagattataggagaattcgttttg
tggatacagcaaaacaggtgaatccttattttgctatagacctgattgaggaggatccagtggtagtggttaacgctagt
tcggtatggagtgacagtggaggggcaatggggcatcctaaagtttatatcaacttggatagacctcaagttggagtgtg
tggatattcagggagaaaatttattcagaagaaattctacgatgagaaaacacacggaccttctataacatatgaacagt
atttagaggaagtaagaccaaaaccgaggaattaa

Protein
Protein IDpfu_aug1.0_1837.1_08144.t1
Definition-
>pfu_aug1.0_1837.1_08144.t1
MALARTFVRSATIRTLARLSSSSAKHVTDGENVDVTTHTGQVWDKEDYRRIRFVDTAKQVNPYFAIDLIEEDPVVVVNAS
SVWSDSGGAMGHPKVYINLDRPQVGVCGYSGRKFIQKKFYDEKTHGPSITYEQYLEEVRPKPRN

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