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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_184.1_36360
Locus scaffold184.1 : 179061 ... 197095 : -
To GenomeBrowser scaffold184.1:179061..197095
Genes list of scaffold scaffold184.1
Synonym pfu_aug2.0_172.1_07095

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_184.1_36360.t1 12 1 LRR_8 91 141 0.0 332.3 4.4e-08 8.2e-05 22.2
pfu_aug1.0_184.1_36360.t1 6 1 LRR_5 91 200 4.6e-35 120.1 7.0e-11 1.3e-07 31.3
pfu_aug1.0_184.1_36360.t1 12 2 LRR_8 108 165 0.0 332.3 3.3e-14 6.2e-11 41.8
pfu_aug1.0_184.1_36360.t1 17 1 LRR_4 109 146 0.0 157.3 0.00029 0.53 9.9
pfu_aug1.0_184.1_36360.t1 21 1 LRR_1 109 122 1.1e-27 91.7 0.28 510.0 1.4
pfu_aug1.0_184.1_36360.t1 8 1 LRR_9 112 166 1.2e-08 34.7 0.0014 2.5 7.6
pfu_aug1.0_184.1_36360.t1 12 3 LRR_8 130 189 0.0 332.3 4.2e-15 7.8e-12 44.7
pfu_aug1.0_184.1_36360.t1 17 2 LRR_4 130 165 0.0 157.3 7.3e-07 0.0014 18.2
pfu_aug1.0_184.1_36360.t1 21 2 LRR_1 131 152 1.1e-27 91.7 0.0037 6.9 7.1
pfu_aug1.0_184.1_36360.t1 14 1 LRR_7 131 144 1.3e-07 30.6 0.24 440.0 1.9
pfu_aug1.0_184.1_36360.t1 8 2 LRR_9 152 218 1.2e-08 34.7 3.0e-06 0.0055 16.2
pfu_aug1.0_184.1_36360.t1 16 1 LRR_6 153 165 6.6e-08 31.8 0.013 24.0 5.3
pfu_aug1.0_184.1_36360.t1 14 2 LRR_7 153 169 1.3e-07 30.6 0.0063 12.0 6.6
pfu_aug1.0_184.1_36360.t1 17 3 LRR_4 154 192 0.0 157.3 1.3e-07 0.00023 20.6
pfu_aug1.0_184.1_36360.t1 21 3 LRR_1 154 170 1.1e-27 91.7 0.0089 17.0 5.9
pfu_aug1.0_184.1_36360.t1 6 2 LRR_5 173 299 4.6e-35 120.1 6.8e-13 1.3e-09 37.8
pfu_aug1.0_184.1_36360.t1 12 4 LRR_8 178 237 0.0 332.3 4.8e-19 8.8e-16 57.4
pfu_aug1.0_184.1_36360.t1 17 4 LRR_4 178 216 0.0 157.3 1.3e-10 2.3e-07 30.2
pfu_aug1.0_184.1_36360.t1 21 4 LRR_1 179 200 1.1e-27 91.7 0.0014 2.6 8.4
pfu_aug1.0_184.1_36360.t1 16 2 LRR_6 179 190 6.6e-08 31.8 0.43 800.0 0.7
pfu_aug1.0_184.1_36360.t1 14 3 LRR_7 179 192 1.3e-07 30.6 0.18 330.0 2.2
pfu_aug1.0_184.1_36360.t1 16 3 LRR_6 200 215 6.6e-08 31.8 0.00038 0.7 10.1
pfu_aug1.0_184.1_36360.t1 17 5 LRR_4 201 241 0.0 157.3 6.7e-11 1.2e-07 31.1
pfu_aug1.0_184.1_36360.t1 14 4 LRR_7 201 216 1.3e-07 30.6 0.0026 4.8 7.8
pfu_aug1.0_184.1_36360.t1 21 5 LRR_1 202 223 1.1e-27 91.7 5.4e-05 0.099 12.7
pfu_aug1.0_184.1_36360.t1 16 4 LRR_6 224 237 6.6e-08 31.8 0.012 22.0 5.4
pfu_aug1.0_184.1_36360.t1 17 6 LRR_4 225 264 0.0 157.3 4.0e-08 7.4e-05 22.2
pfu_aug1.0_184.1_36360.t1 14 5 LRR_7 225 237 1.3e-07 30.6 0.0042 7.8 7.1
pfu_aug1.0_184.1_36360.t1 12 5 LRR_8 226 285 0.0 332.3 1.3e-17 2.3e-14 52.8
pfu_aug1.0_184.1_36360.t1 21 6 LRR_1 226 237 1.1e-27 91.7 0.0023 4.2 7.7
pfu_aug1.0_184.1_36360.t1 16 5 LRR_6 249 262 6.6e-08 31.8 0.73 1400.0 -0.1
pfu_aug1.0_184.1_36360.t1 21 7 LRR_1 250 272 1.1e-27 91.7 0.0088 16.0 5.9
pfu_aug1.0_184.1_36360.t1 14 6 LRR_7 250 263 1.3e-07 30.6 0.099 180.0 3.0
pfu_aug1.0_184.1_36360.t1 8 3 LRR_9 253 357 1.2e-08 34.7 0.0013 2.4 7.7
pfu_aug1.0_184.1_36360.t1 17 7 LRR_4 274 313 0.0 157.3 6.2e-06 0.011 15.2
pfu_aug1.0_184.1_36360.t1 12 6 LRR_8 275 331 0.0 332.3 2.4e-15 4.5e-12 45.5
pfu_aug1.0_184.1_36360.t1 21 8 LRR_1 279 296 1.1e-27 91.7 0.064 120.0 3.3
pfu_aug1.0_184.1_36360.t1 6 3 LRR_5 287 415 4.6e-35 120.1 2.5e-11 4.6e-08 32.8
pfu_aug1.0_184.1_36360.t1 16 6 LRR_6 296 309 6.6e-08 31.8 0.93 1700.0 -0.4
pfu_aug1.0_184.1_36360.t1 21 9 LRR_1 298 317 1.1e-27 91.7 0.012 23.0 5.5
pfu_aug1.0_184.1_36360.t1 14 7 LRR_7 298 313 1.3e-07 30.6 0.059 110.0 3.7
pfu_aug1.0_184.1_36360.t1 17 8 LRR_4 319 335 0.0 157.3 0.0053 9.9 5.9
pfu_aug1.0_184.1_36360.t1 12 7 LRR_8 322 381 0.0 332.3 3.2e-16 5.9e-13 48.3
pfu_aug1.0_184.1_36360.t1 16 7 LRR_6 322 334 6.6e-08 31.8 0.045 83.0 3.7
pfu_aug1.0_184.1_36360.t1 17 9 LRR_4 323 362 0.0 157.3 1.6e-05 0.03 13.9
pfu_aug1.0_184.1_36360.t1 21 10 LRR_1 323 341 1.1e-27 91.7 0.016 29.0 5.2
pfu_aug1.0_184.1_36360.t1 14 8 LRR_7 323 335 1.3e-07 30.6 0.02 37.0 5.1
pfu_aug1.0_184.1_36360.t1 6 4 LRR_5 334 468 4.6e-35 120.1 4.9e-08 9.1e-05 22.1
pfu_aug1.0_184.1_36360.t1 16 8 LRR_6 345 365 6.6e-08 31.8 0.0015 2.7 8.3
pfu_aug1.0_184.1_36360.t1 17 10 LRR_4 346 387 0.0 157.3 1.3e-06 0.0024 17.4
pfu_aug1.0_184.1_36360.t1 21 11 LRR_1 346 365 1.1e-27 91.7 0.013 25.0 5.4
pfu_aug1.0_184.1_36360.t1 14 9 LRR_7 346 360 1.3e-07 30.6 0.28 520.0 1.6
pfu_aug1.0_184.1_36360.t1 8 4 LRR_9 349 446 1.2e-08 34.7 0.013 23.0 4.4
pfu_aug1.0_184.1_36360.t1 17 11 LRR_4 372 410 0.0 157.3 1.6e-05 0.03 13.9
pfu_aug1.0_184.1_36360.t1 21 12 LRR_1 372 383 1.1e-27 91.7 0.17 320.0 2.0
pfu_aug1.0_184.1_36360.t1 12 8 LRR_8 388 414 0.0 332.3 6.6e-06 0.012 15.3
pfu_aug1.0_184.1_36360.t1 17 12 LRR_4 394 435 0.0 157.3 3.6e-06 0.0066 16.0
pfu_aug1.0_184.1_36360.t1 21 13 LRR_1 395 413 1.1e-27 91.7 0.00047 0.88 9.8
pfu_aug1.0_184.1_36360.t1 16 9 LRR_6 395 411 6.6e-08 31.8 0.00055 1.0 9.6
pfu_aug1.0_184.1_36360.t1 14 10 LRR_7 395 406 1.3e-07 30.6 0.028 53.0 4.6
pfu_aug1.0_184.1_36360.t1 8 5 LRR_9 421 485 1.2e-08 34.7 8.4e-05 0.16 11.5
pfu_aug1.0_184.1_36360.t1 16 10 LRR_6 421 434 6.6e-08 31.8 0.068 130.0 3.1
pfu_aug1.0_184.1_36360.t1 12 9 LRR_8 422 482 0.0 332.3 2.9e-18 5.3e-15 54.9
pfu_aug1.0_184.1_36360.t1 6 5 LRR_5 423 539 4.6e-35 120.1 5.9e-13 1.1e-09 38.0
pfu_aug1.0_184.1_36360.t1 21 14 LRR_1 423 443 1.1e-27 91.7 0.067 120.0 3.2
pfu_aug1.0_184.1_36360.t1 17 13 LRR_4 424 467 0.0 157.3 3.5e-09 6.5e-06 25.6
pfu_aug1.0_184.1_36360.t1 8 6 LRR_9 427 529 1.2e-08 34.7 7.2e-05 0.13 11.7
pfu_aug1.0_184.1_36360.t1 16 11 LRR_6 445 460 6.6e-08 31.8 0.00094 1.7 8.9
pfu_aug1.0_184.1_36360.t1 14 11 LRR_7 446 461 1.3e-07 30.6 0.0072 13.0 6.4
pfu_aug1.0_184.1_36360.t1 21 15 LRR_1 447 469 1.1e-27 91.7 0.00094 1.7 8.9
pfu_aug1.0_184.1_36360.t1 12 10 LRR_8 471 530 0.0 332.3 4.4e-15 8.2e-12 44.7
pfu_aug1.0_184.1_36360.t1 17 14 LRR_4 471 496 0.0 157.3 0.0024 4.4 7.0
pfu_aug1.0_184.1_36360.t1 21 16 LRR_1 472 490 1.1e-27 91.7 0.49 910.0 0.6
pfu_aug1.0_184.1_36360.t1 16 12 LRR_6 472 484 6.6e-08 31.8 0.11 200.0 2.5
pfu_aug1.0_184.1_36360.t1 17 15 LRR_4 494 534 0.0 157.3 7.7e-10 1.4e-06 27.7
pfu_aug1.0_184.1_36360.t1 21 17 LRR_1 495 517 1.1e-27 91.7 0.42 770.0 0.8
pfu_aug1.0_184.1_36360.t1 8 7 LRR_9 499 576 1.2e-08 34.7 0.00028 0.51 9.8
pfu_aug1.0_184.1_36360.t1 16 13 LRR_6 517 532 6.6e-08 31.8 0.019 35.0 4.9
pfu_aug1.0_184.1_36360.t1 12 11 LRR_8 519 578 0.0 332.3 1.7e-13 3.1e-10 39.6
pfu_aug1.0_184.1_36360.t1 21 18 LRR_1 519 539 1.1e-27 91.7 0.0002 0.37 11.0
pfu_aug1.0_184.1_36360.t1 14 12 LRR_7 519 534 1.3e-07 30.6 0.11 210.0 2.8
pfu_aug1.0_184.1_36360.t1 17 16 LRR_4 543 578 0.0 157.3 4.1e-07 0.00075 19.0
pfu_aug1.0_184.1_36360.t1 21 19 LRR_1 543 554 1.1e-27 91.7 0.19 340.0 1.9
pfu_aug1.0_184.1_36360.t1 16 14 LRR_6 543 553 6.6e-08 31.8 0.28 530.0 1.2
pfu_aug1.0_184.1_36360.t1 8 8 LRR_9 546 625 1.2e-08 34.7 0.0011 2.0 7.9
pfu_aug1.0_184.1_36360.t1 16 15 LRR_6 565 579 6.6e-08 31.8 0.015 28.0 5.1
pfu_aug1.0_184.1_36360.t1 14 13 LRR_7 566 578 1.3e-07 30.6 0.66 1200.0 0.5
pfu_aug1.0_184.1_36360.t1 21 20 LRR_1 567 580 1.1e-27 91.7 0.016 30.0 5.1
pfu_aug1.0_184.1_36360.t1 14 14 LRR_7 590 604 1.3e-07 30.6 0.67 1200.0 0.5
pfu_aug1.0_184.1_36360.t1 12 12 LRR_8 591 623 0.0 332.3 0.0021 3.9 7.3
pfu_aug1.0_184.1_36360.t1 21 21 LRR_1 591 610 1.1e-27 91.7 0.0087 16.0 6.0
pfu_aug1.0_184.1_36360.t1 16 16 LRR_6 591 603 6.6e-08 31.8 0.081 150.0 2.9
pfu_aug1.0_184.1_36360.t1 17 17 LRR_4 592 610 0.0 157.3 0.033 62.0 3.3
pfu_aug1.0_184.1_36360.t1 6 6 LRR_5 681 714 4.6e-35 120.1 0.18 330.0 0.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_184.1_36360.t1 gi|260803667|ref|XP_002596711.1| hypothetical protein BRAFLDRAFT_78389 [Branchiostoma floridae] 0.0

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
adductorMuscle 1

Transcript
Transcript IDpfu_aug1.0_184.1_36360.t1
Definition-
>pfu_aug1.0_184.1_36360.t1
atgggtgaaaactggaaaagggaaaatttcagtcgttataatcttgaacatcttcaaaaggtggttcgaaacgaacagaa
ttcccttcctttgcattctcatcaatctccaaggaacattttcgtgcctgtaatgtttatgtacatgcatactcataatt
gcgtatcgaatctaatttattcggtagacctctcaaagttaacagtatacggggacagcagtagtcaatctagcccatca
cgtgccatcaacgaccaatcaaaagtgtcgacacaaatccatcaaattgatagaacatcattcagggggaacgtcttaat
gaaggaagttacactgtccggaaacaatataaacgtcatgtttccttatgttttttactaccttagagaactgaagattt
tgaatttaccgaacaacaacatccggcatttatcggccgcggtctttcacggacttcataaattagaagagctccgtctg
tctgataatacgataagatttcttcctactccaattttcacttatctacgagaactcaaaatattgaaactgaatggaaa
caaaatcaggtcgattcaaagagatatatttaaatctttgacgagattagaggtgttggatatgtctagaaataacataa
cagacttgtacgaaacagtttttgatcacaatacaaaactgcaagaattatatctgagcggcaacagactttggaaatta
cggcctcgctggtttaagtatctttataatctgaaacgattgtccttaaagggtaatatgataaaggaggtagaatcggc
tagctttgtgaatttacattaccttggagacctagctctgtcagccaatcatattgagaaaatccacgatgatgccttcc
ggaacctgcgcaacatgaaggttttagacatatcgaccaatgatatgacagaatttccatccaggtgcttcgtagatctt
acactgcttgaagacttgtatttgggtaataacaagttgacaattataaagaatggcacgtttgcattttcttcaaaatt
gatgagactagacttgtccaaaaacacaatatcaaccatcgaagctgaatcattacacccacttacgaaagctcaataca
tcgacttttcacataacaaattaatatcttttaagaagcttgcgattcatggactagagggacttaaagagcttgacttg
tcctacaactttattgggaaaatagaaccagaatcattcagaacttcacctgtagacagactgtcccaactctcgacact
aaaactaaaaaataacaatattaaagtagttgattccgatacattggctgggatgcctaatctgaacactttggacttga
gcagcaacaaaatcaagcgaatcaacgagaaagctttacagaatttagaggggttacagtccttaaaaataaataaaaat
agaattcgagatttgaaaaatggagttttatcgcgccaaacaaatctgcttgacctagatttttcggaaaacctactgaa
aagactcgatgaaaaaatgtttgcaggtcttaaaaatctagaggagatagatgccagttccaaccggatttcctcaatcc
caaagaaagtattccgaccacttgttaatttggtatcacttgacttgcgagaaaataaaatgctgctttttaatatgtct
acagtggcaaacctaccaaaattatcttttatcgatttaagcgataataatttgttttctgtggatttcccatctcaaca
ggaactcagattgtcggaactaattctctccaagaacaatcttaattcaattcataaagatattgccaatgtaatgtcga
cgtctgccatggttgcactgtctggaaacccgctgttatgtgactgcaacatcaagtggatgcttgatcccttgatgtca
aggaagattagagtagagcgttcagaagacgtcatgtgtaagacaccagataagcatcatgggaagaaggtgatagattt
atccgagcgtgacttggactgtcagagccctaataatacaaagaagagtatggtctgtgaggacatcagtcaaatcaatc
agaaatggtactccagcaggaacgtgaagaaagccatgataaagaatcacgtgaccattctggatggtcaaaataagcca
atcgcaaacgcagtcctgctatccgacagatgggcgctcgctaaaggaagtaccgtccgcgttatcaaacagtccacaaa
tcccgatgaattcaaggtcaaggttggtcgacagaaaagtaacaggaaaatcgttagaatcttccgacatccattgatat
cgtaccgaatgatgcagtatgatgttgctcttatacgactgagtgagaaaacaacaggaccaaaacaacaagaaatgcca
tgcttgatgacggaacatcagtatcaacttatatcaaaacttctaaagagggtctgcatcacaacaagaatttatggtaa
aaattctataacaagactgaagccaagaaacggaaaattagcgagaaaatgtaagcgcaaagagttcgtgtgcactctat
tcaaaaagccgaaacgatctgcaatgctttatgatggatcgcccctttatatgggttactcaaactctttaaggcttgca
ggaattgcaacagacgacacaaatacgaaaaactttgaatatactttcatccccgtgtggaaagtgtccgactgggtgac
gtcagtcgtggaccagtaccaagaaaaatgtcacacggacagagacggacacgaattatgttccggattacgattaccaa
gtgtttctgatatgctttccaaattaaatcgtccggaaagacataaataa

Protein
Protein IDpfu_aug1.0_184.1_36360.t1
Definition-
>pfu_aug1.0_184.1_36360.t1
MGENWKRENFSRYNLEHLQKVVRNEQNSLPLHSHQSPRNIFVPVMFMYMHTHNCVSNLIYSVDLSKLTVYGDSSSQSSPS
RAINDQSKVSTQIHQIDRTSFRGNVLMKEVTLSGNNINVMFPYVFYYLRELKILNLPNNNIRHLSAAVFHGLHKLEELRL
SDNTIRFLPTPIFTYLRELKILKLNGNKIRSIQRDIFKSLTRLEVLDMSRNNITDLYETVFDHNTKLQELYLSGNRLWKL
RPRWFKYLYNLKRLSLKGNMIKEVESASFVNLHYLGDLALSANHIEKIHDDAFRNLRNMKVLDISTNDMTEFPSRCFVDL
TLLEDLYLGNNKLTIIKNGTFAFSSKLMRLDLSKNTISTIEAESLHPLTKAQYIDFSHNKLISFKKLAIHGLEGLKELDL
SYNFIGKIEPESFRTSPVDRLSQLSTLKLKNNNIKVVDSDTLAGMPNLNTLDLSSNKIKRINEKALQNLEGLQSLKINKN
RIRDLKNGVLSRQTNLLDLDFSENLLKRLDEKMFAGLKNLEEIDASSNRISSIPKKVFRPLVNLVSLDLRENKMLLFNMS
TVANLPKLSFIDLSDNNLFSVDFPSQQELRLSELILSKNNLNSIHKDIANVMSTSAMVALSGNPLLCDCNIKWMLDPLMS
RKIRVERSEDVMCKTPDKHHGKKVIDLSERDLDCQSPNNTKKSMVCEDISQINQKWYSSRNVKKAMIKNHVTILDGQNKP
IANAVLLSDRWALAKGSTVRVIKQSTNPDEFKVKVGRQKSNRKIVRIFRHPLISYRMMQYDVALIRLSEKTTGPKQQEMP
CLMTEHQYQLISKLLKRVCITTRIYGKNSITRLKPRNGKLARKCKRKEFVCTLFKKPKRSAMLYDGSPLYMGYSNSLRLA
GIATDDTNTKNFEYTFIPVWKVSDWVTSVVDQYQEKCHTDRDGHELCSGLRLPSVSDMLSKLNRPERHK

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Okinawa Institute of Science and Technology
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