Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_18408.1_11128
Locus scaffold18408.1 : 13501 ... 27745 : -
To GenomeBrowser scaffold18408.1:13501..27745
Genes list of scaffold scaffold18408.1
Synonym pfu_aug2.0_95.1_16910

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_18408.1_11128.t1 1 1 Glyco_transf_10 70 384 0.0 246.7 0.0 0.0 246.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_18408.1_11128.t1 gi|195432332|ref|XP_002064177.1| GK20026 [Drosophila willistoni] 1.4013e-45

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_18408.1_11128.t1
Definition-
>pfu_aug1.0_18408.1_11128.t1
atgatcaatagaaaatatgtgttgtttgccacattgacctcgtccattatagtagtaatgattatctaccgtgctccgat
acagataaaaataatgagcatcattcataagcatgctccatcagagactaagagcaatattcaggggccgtctcattcta
aaactgtatccagaattcagaatcggacttctgcaaacaatgaagtaacagtgccgcacaaattgtcatcaaagactgta
tccaaacataagaagagtaatgaaaccataagacatattttgtactggaatccacctggctacttcttgcatcctgaaga
tgtcagtaggcggagttgcatggttggtaattgcgaactgacatttaacaaagaaatgataaaaaaggccgatgcagtta
ttttcaatgctcaaagtccaacaaaattaccgaagaaagagtttggtcaggtttgggttttcttaacgttagaacccgcg
gattttaccggaaggcatatagaacgttgggaacgcatgatgaattggacttggacgtaccgaagggactctgacatatt
tcaaccgtatgtaggcttcaaacaaagaaaaacaccaatacaggaaacattattacttgagaaactaagtaataaaatga
gagacataacttggatggtcagtcactgtcaaacaacaggaaaacgggaattatacgcgaaaaatctaaagaagttttct
tctgtggatatatttggtgcctgtggatctcaaggctgcccgcgatttagcaaagcttgcgacaaacttctggaaactta
cagatattacctggcatttgaaaattgcttgtgtagagattatgcaaccgagaaaatttttaatacaatggaatatttca
tcgtccctatcgtctatggcggatataactcatcggtatattttccaccaaaatcaataatagataccaaggaattccct
caggcatcagtcttgagcaagaagctgaaatccatcgcgtcagatcttgaaaaataccgcgaatattaccaatggagaga
ctattatgatataggtcatccataccatgatacatggtgtgatttgtgttcaaaacttcacaatcaacataaatatcgtc
gactgtacgacaacatagccaactggtggaaaggccattcgtcaaagtccggacagttctgtcgtagacccaccttaaac
cagtttatagataaatcttga

Protein
Protein IDpfu_aug1.0_18408.1_11128.t1
Definition-
>pfu_aug1.0_18408.1_11128.t1
MINRKYVLFATLTSSIIVVMIIYRAPIQIKIMSIIHKHAPSETKSNIQGPSHSKTVSRIQNRTSANNEVTVPHKLSSKTV
SKHKKSNETIRHILYWNPPGYFLHPEDVSRRSCMVGNCELTFNKEMIKKADAVIFNAQSPTKLPKKEFGQVWVFLTLEPA
DFTGRHIERWERMMNWTWTYRRDSDIFQPYVGFKQRKTPIQETLLLEKLSNKMRDITWMVSHCQTTGKRELYAKNLKKFS
SVDIFGACGSQGCPRFSKACDKLLETYRYYLAFENCLCRDYATEKIFNTMEYFIVPIVYGGYNSSVYFPPKSIIDTKEFP
QASVLSKKLKSIASDLEKYREYYQWRDYYDIGHPYHDTWCDLCSKLHNQHKYRRLYDNIANWWKGHSSKSGQFCRRPTLN
QFIDKS

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495