Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_1841.1_51426
Locus scaffold1841.1 : 1189 ... 15925 : -
To GenomeBrowser scaffold1841.1:1189..15925
Genes list of scaffold scaffold1841.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_1841.1_51426.t1 6 1 Calx-beta 42 106 2.2e-31 107.7 6.5e-16 9.6e-12 44.7
pfu_aug1.0_1841.1_51426.t1 6 2 Calx-beta 144 230 2.2e-31 107.7 9.6e-10 1.4e-05 24.9
pfu_aug1.0_1841.1_51426.t1 6 3 Calx-beta 362 431 2.2e-31 107.7 0.00026 3.9 7.4
pfu_aug1.0_1841.1_51426.t1 6 4 Calx-beta 451 548 2.2e-31 107.7 2.3e-05 0.34 10.8
pfu_aug1.0_1841.1_51426.t1 6 5 Calx-beta 623 666 2.2e-31 107.7 1.2e-08 0.00018 21.4
pfu_aug1.0_1841.1_51426.t1 6 6 Calx-beta 768 791 2.2e-31 107.7 0.074 1100.0 -0.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_1841.1_51426.t1 gi|354484527|ref|XP_003504438.1| PREDICTED: G-protein coupled receptor 98 isoform X1 [Cricetulus griseus] 0.0

Transcript
Transcript IDpfu_aug1.0_1841.1_51426.t1
Definition-
>pfu_aug1.0_1841.1_51426.t1
atgaaagatcttaatgatcaacgcattcctttatttcagcatgagtatcgctttgaagagaatacagacaataatgtttt
ctctatacctgttctacgaggaattggtgacgatggttttaccagaatcggtgccatcaattcagtagcatctgtgaatt
actttgtcatgtcagacactgcctctgcaggaatagacttccaaaatctgaatggtcaaatagtgttttctcctggcgag
accactaaggatttggaactgaggattatagatgatagcattcctgagatcgaggaacaattcgaagtatacctttccga
tgagcagggcgacgtgatactaacatatcccaccagagtattgattaaaatcaatgaaaacgacaacccattcggtctta
tcagcttttcatctgatgaccaaaactctccaccggtgttgagggttaacgaagattcagttcgtaacgtgacgttttct
gttgtccgcagtagaggaacatttgggactgtatcagtgtcttggcgcgtgtacagaaatgattcctccacagatgtggt
atcagcagacatcgttacgaccagtggagttataatttttcaatccggtgttgacaaatcatcattaacaatcacaattg
ttggggatgttattccagaaccgacggaacagtacagagtccaactcatgtcaggaacagagacaggtggggctgaagta
caggaaatttcctacggtattctagtgatagaggacagtgataattattacggaatagtagagtttggagtagaagctga
acagcagataattgtgacaacatcacctaggaatcttcagctatacttcagaagaaatggccacaaccaaggcgacttac
ttatgaacgtgacagtgtcttattttggatccgccagcataacagacacaccacttggacattttaacacaccaactctt
ggcagtcgagtacaagtgaagattccagttaccatagccgtagcaaatggagagattggctttagtagtgtacagacagt
ggttgttccggaacctgatacatccccgctatcggtatatcttaacatatcaagagaaggtacaagcggacaggctaccg
ttatatggttaatgagaggaactggagataatgcagacatggtaaccgatggtgatactctatataagtcaggacaggtg
ataatggaagcaggatcttccgaggccacggttatcttgacgattatgccagatgacgttcctgaacttgaagaagagat
gacggtcacactgatatcagccacgccgtcagacacccaacgactgaaaatcggagcaactgatatcaaagtaattattg
aggagaacgacaatcctggaggaatatttgaattctcaccttctatgaaaagtacatatgaagtacaagaaggtagttca
gcaattgaagtgatcgtagagagatcaggtggtaatctcctgtctcagagtgtacagtatgctgtaacaccacgagggag
tgaggaattctatggcgccactaacgtgctgagatttggagaaggaatatcatctttaaagactttccttttggccgtcg
aggatggaataccagagctttccgaggagtacaacttgactttacaagcttatggaaattccactgctatgattggtcca
agatctacgatatcaatcaaagtgctggccaatgaggatccgtatgggctttttgaatttctggaccaacaaccagtcta
tttactcaatgaatctatgaatgccgacaaaacaagcaagaatatcccagtgacaagaagacagggaacatttggaaata
tctcagtatcgtggacagtgattccaaatcatggcgaggatctgcttcctgtttctggtactgtggtgtttgaagagggt
caggatattggatatatattcatagaaacggtcctagatgatgtttctgaaacacaagaaaatttcactgttgttttagc
agtggacgaagagaaaggtcgattaggttctaggagttctgccttaattattataccagctaacgacttcagactatatt
acagagttgtagaaggaataaacgactcacaattggcgtctcttgatgattccaatacagaggtcatcattacagtcaag
gcaagtgatgatccgtatgggcgattcgcattttccaaaaagacagagaatttaataatttcggaggattattatcccgg
tggagaaggtaatgcgagagctgtattcattgtggaacgcagacaaggatttttccgagacgttgaaccattcactttga
aggttaaagatgacgcacttccggaaccacaagaactgttccagatcaaacttgtaggcgtcagtagtaatgatggagta
ttaggcagtacaaactccagtggtggtagtatcaatgcctcggcggcatccttctctttcatcatacagaagaatgacaa
tgctaatggtcttctgcaattttcaaatgcgacgtttccacctcaaccaggtcaaggaatcataaaccctgcttctgaga
gaccgacagtaagctttaacaatctttacgagcaatatagtagtatttttggatttgctcccagaacagggtaa

Protein
Protein IDpfu_aug1.0_1841.1_51426.t1
Definition-
>pfu_aug1.0_1841.1_51426.t1
MKDLNDQRIPLFQHEYRFEENTDNNVFSIPVLRGIGDDGFTRIGAINSVASVNYFVMSDTASAGIDFQNLNGQIVFSPGE
TTKDLELRIIDDSIPEIEEQFEVYLSDEQGDVILTYPTRVLIKINENDNPFGLISFSSDDQNSPPVLRVNEDSVRNVTFS
VVRSRGTFGTVSVSWRVYRNDSSTDVVSADIVTTSGVIIFQSGVDKSSLTITIVGDVIPEPTEQYRVQLMSGTETGGAEV
QEISYGILVIEDSDNYYGIVEFGVEAEQQIIVTTSPRNLQLYFRRNGHNQGDLLMNVTVSYFGSASITDTPLGHFNTPTL
GSRVQVKIPVTIAVANGEIGFSSVQTVVVPEPDTSPLSVYLNISREGTSGQATVIWLMRGTGDNADMVTDGDTLYKSGQV
IMEAGSSEATVILTIMPDDVPELEEEMTVTLISATPSDTQRLKIGATDIKVIIEENDNPGGIFEFSPSMKSTYEVQEGSS
AIEVIVERSGGNLLSQSVQYAVTPRGSEEFYGATNVLRFGEGISSLKTFLLAVEDGIPELSEEYNLTLQAYGNSTAMIGP
RSTISIKVLANEDPYGLFEFLDQQPVYLLNESMNADKTSKNIPVTRRQGTFGNISVSWTVIPNHGEDLLPVSGTVVFEEG
QDIGYIFIETVLDDVSETQENFTVVLAVDEEKGRLGSRSSALIIIPANDFRLYYRVVEGINDSQLASLDDSNTEVIITVK
ASDDPYGRFAFSKKTENLIISEDYYPGGEGNARAVFIVERRQGFFRDVEPFTLKVKDDALPEPQELFQIKLVGVSSNDGV
LGSTNSSGGSINASAASFSFIIQKNDNANGLLQFSNATFPPQPGQGIINPASERPTVSFNNLYEQYSSIFGFAPRTG

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495