Gene
Gene Model ID | pfu_aug1.0_1841.1_51426 |
---|---|
Locus | scaffold1841.1 : 1189 ... 15925 : - |
To GenomeBrowser | scaffold1841.1:1189..15925 |
Genes list of scaffold | scaffold1841.1 |
Synonym | NA |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_1841.1_51426.t1 | 6 | 1 | Calx-beta | 42 | 106 | 2.2e-31 | 107.7 | 6.5e-16 | 9.6e-12 | 44.7 |
pfu_aug1.0_1841.1_51426.t1 | 6 | 2 | Calx-beta | 144 | 230 | 2.2e-31 | 107.7 | 9.6e-10 | 1.4e-05 | 24.9 |
pfu_aug1.0_1841.1_51426.t1 | 6 | 3 | Calx-beta | 362 | 431 | 2.2e-31 | 107.7 | 0.00026 | 3.9 | 7.4 |
pfu_aug1.0_1841.1_51426.t1 | 6 | 4 | Calx-beta | 451 | 548 | 2.2e-31 | 107.7 | 2.3e-05 | 0.34 | 10.8 |
pfu_aug1.0_1841.1_51426.t1 | 6 | 5 | Calx-beta | 623 | 666 | 2.2e-31 | 107.7 | 1.2e-08 | 0.00018 | 21.4 |
pfu_aug1.0_1841.1_51426.t1 | 6 | 6 | Calx-beta | 768 | 791 | 2.2e-31 | 107.7 | 0.074 | 1100.0 | -0.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_1841.1_51426.t1 | gi|354484527|ref|XP_003504438.1| | PREDICTED: G-protein coupled receptor 98 isoform X1 [Cricetulus griseus] | 0.0 |
Transcript
Transcript ID | pfu_aug1.0_1841.1_51426.t1 |
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Definition | - |
>pfu_aug1.0_1841.1_51426.t1 atgaaagatcttaatgatcaacgcattcctttatttcagcatgagtatcgctttgaagagaatacagacaataatgtttt ctctatacctgttctacgaggaattggtgacgatggttttaccagaatcggtgccatcaattcagtagcatctgtgaatt actttgtcatgtcagacactgcctctgcaggaatagacttccaaaatctgaatggtcaaatagtgttttctcctggcgag accactaaggatttggaactgaggattatagatgatagcattcctgagatcgaggaacaattcgaagtatacctttccga tgagcagggcgacgtgatactaacatatcccaccagagtattgattaaaatcaatgaaaacgacaacccattcggtctta tcagcttttcatctgatgaccaaaactctccaccggtgttgagggttaacgaagattcagttcgtaacgtgacgttttct gttgtccgcagtagaggaacatttgggactgtatcagtgtcttggcgcgtgtacagaaatgattcctccacagatgtggt atcagcagacatcgttacgaccagtggagttataatttttcaatccggtgttgacaaatcatcattaacaatcacaattg ttggggatgttattccagaaccgacggaacagtacagagtccaactcatgtcaggaacagagacaggtggggctgaagta caggaaatttcctacggtattctagtgatagaggacagtgataattattacggaatagtagagtttggagtagaagctga acagcagataattgtgacaacatcacctaggaatcttcagctatacttcagaagaaatggccacaaccaaggcgacttac ttatgaacgtgacagtgtcttattttggatccgccagcataacagacacaccacttggacattttaacacaccaactctt ggcagtcgagtacaagtgaagattccagttaccatagccgtagcaaatggagagattggctttagtagtgtacagacagt ggttgttccggaacctgatacatccccgctatcggtatatcttaacatatcaagagaaggtacaagcggacaggctaccg ttatatggttaatgagaggaactggagataatgcagacatggtaaccgatggtgatactctatataagtcaggacaggtg ataatggaagcaggatcttccgaggccacggttatcttgacgattatgccagatgacgttcctgaacttgaagaagagat gacggtcacactgatatcagccacgccgtcagacacccaacgactgaaaatcggagcaactgatatcaaagtaattattg aggagaacgacaatcctggaggaatatttgaattctcaccttctatgaaaagtacatatgaagtacaagaaggtagttca gcaattgaagtgatcgtagagagatcaggtggtaatctcctgtctcagagtgtacagtatgctgtaacaccacgagggag tgaggaattctatggcgccactaacgtgctgagatttggagaaggaatatcatctttaaagactttccttttggccgtcg aggatggaataccagagctttccgaggagtacaacttgactttacaagcttatggaaattccactgctatgattggtcca agatctacgatatcaatcaaagtgctggccaatgaggatccgtatgggctttttgaatttctggaccaacaaccagtcta tttactcaatgaatctatgaatgccgacaaaacaagcaagaatatcccagtgacaagaagacagggaacatttggaaata tctcagtatcgtggacagtgattccaaatcatggcgaggatctgcttcctgtttctggtactgtggtgtttgaagagggt caggatattggatatatattcatagaaacggtcctagatgatgtttctgaaacacaagaaaatttcactgttgttttagc agtggacgaagagaaaggtcgattaggttctaggagttctgccttaattattataccagctaacgacttcagactatatt acagagttgtagaaggaataaacgactcacaattggcgtctcttgatgattccaatacagaggtcatcattacagtcaag gcaagtgatgatccgtatgggcgattcgcattttccaaaaagacagagaatttaataatttcggaggattattatcccgg tggagaaggtaatgcgagagctgtattcattgtggaacgcagacaaggatttttccgagacgttgaaccattcactttga aggttaaagatgacgcacttccggaaccacaagaactgttccagatcaaacttgtaggcgtcagtagtaatgatggagta ttaggcagtacaaactccagtggtggtagtatcaatgcctcggcggcatccttctctttcatcatacagaagaatgacaa tgctaatggtcttctgcaattttcaaatgcgacgtttccacctcaaccaggtcaaggaatcataaaccctgcttctgaga gaccgacagtaagctttaacaatctttacgagcaatatagtagtatttttggatttgctcccagaacagggtaa |
Protein
Protein ID | pfu_aug1.0_1841.1_51426.t1 |
---|---|
Definition | - |
>pfu_aug1.0_1841.1_51426.t1 MKDLNDQRIPLFQHEYRFEENTDNNVFSIPVLRGIGDDGFTRIGAINSVASVNYFVMSDTASAGIDFQNLNGQIVFSPGE TTKDLELRIIDDSIPEIEEQFEVYLSDEQGDVILTYPTRVLIKINENDNPFGLISFSSDDQNSPPVLRVNEDSVRNVTFS VVRSRGTFGTVSVSWRVYRNDSSTDVVSADIVTTSGVIIFQSGVDKSSLTITIVGDVIPEPTEQYRVQLMSGTETGGAEV QEISYGILVIEDSDNYYGIVEFGVEAEQQIIVTTSPRNLQLYFRRNGHNQGDLLMNVTVSYFGSASITDTPLGHFNTPTL GSRVQVKIPVTIAVANGEIGFSSVQTVVVPEPDTSPLSVYLNISREGTSGQATVIWLMRGTGDNADMVTDGDTLYKSGQV IMEAGSSEATVILTIMPDDVPELEEEMTVTLISATPSDTQRLKIGATDIKVIIEENDNPGGIFEFSPSMKSTYEVQEGSS AIEVIVERSGGNLLSQSVQYAVTPRGSEEFYGATNVLRFGEGISSLKTFLLAVEDGIPELSEEYNLTLQAYGNSTAMIGP RSTISIKVLANEDPYGLFEFLDQQPVYLLNESMNADKTSKNIPVTRRQGTFGNISVSWTVIPNHGEDLLPVSGTVVFEEG QDIGYIFIETVLDDVSETQENFTVVLAVDEEKGRLGSRSSALIIIPANDFRLYYRVVEGINDSQLASLDDSNTEVIITVK ASDDPYGRFAFSKKTENLIISEDYYPGGEGNARAVFIVERRQGFFRDVEPFTLKVKDDALPEPQELFQIKLVGVSSNDGV LGSTNSSGGSINASAASFSFIIQKNDNANGLLQFSNATFPPQPGQGIINPASERPTVSFNNLYEQYSSIFGFAPRTG |