Gene
| Gene Model ID | pfu_aug1.0_18429.1_32913 |
|---|---|
| Locus | scaffold18429.1 : 4053 ... 9425 : - |
| To GenomeBrowser | scaffold18429.1:4053..9425 |
| Genes list of scaffold | scaffold18429.1 |
| Synonym | pfu_aug2.0_784.1_14554 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18429.1_32913.t1 | 3 | 1 | Cadherin_2 | 12 | 98 | 6.0e-15 | 54.5 | 3.1e-16 | 1.5e-12 | 46.8 |
| pfu_aug1.0_18429.1_32913.t1 | 7 | 1 | Cadherin | 15 | 85 | 0.0 | 299.1 | 1.6e-07 | 0.0008 | 19.6 |
| pfu_aug1.0_18429.1_32913.t1 | 7 | 2 | Cadherin | 132 | 229 | 0.0 | 299.1 | 1.4e-15 | 6.8e-12 | 45.4 |
| pfu_aug1.0_18429.1_32913.t1 | 3 | 2 | Cadherin_2 | 189 | 202 | 6.0e-15 | 54.5 | 0.13 | 640.0 | 0.0 |
| pfu_aug1.0_18429.1_32913.t1 | 7 | 3 | Cadherin | 243 | 335 | 0.0 | 299.1 | 1.5e-17 | 7.6e-14 | 51.7 |
| pfu_aug1.0_18429.1_32913.t1 | 7 | 4 | Cadherin | 356 | 443 | 0.0 | 299.1 | 1.1e-13 | 5.3e-10 | 39.4 |
| pfu_aug1.0_18429.1_32913.t1 | 7 | 5 | Cadherin | 460 | 546 | 0.0 | 299.1 | 2.0e-19 | 9.9e-16 | 57.7 |
| pfu_aug1.0_18429.1_32913.t1 | 3 | 3 | Cadherin_2 | 499 | 519 | 6.0e-15 | 54.5 | 0.043 | 210.0 | 1.5 |
| pfu_aug1.0_18429.1_32913.t1 | 7 | 6 | Cadherin | 562 | 652 | 0.0 | 299.1 | 9.6e-21 | 4.7e-17 | 62.0 |
| pfu_aug1.0_18429.1_32913.t1 | 7 | 7 | Cadherin | 677 | 735 | 0.0 | 299.1 | 3.8e-09 | 1.9e-05 | 24.8 |
Transcript
| Transcript ID | pfu_aug1.0_18429.1_32913.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18429.1_32913.t1 atgacaatcggaataagtgctcaagatgattatgtacgttttactgctgatgaagaggagcctaaagggacatatatagg gaacatagcgacgaaagccaacatttccggacagaatctatcctcggacgatgctgctactttggagtacaggctcctgg ttcagaacaatccacattcagaactttttcatatcaatgaacgagacgggacactttttgtggccagtagaattgacaga gaatctatttgtgaatttgttgacgagtgcatcctattgctggatgtaatttgcagaactgcttccgctaacttttacaa aaagattaaaattgcagtaaacatcacggacatcaatgacaatgttccttctttcgggaaattaacggagactttagaaa tgtcagaaggatctttggagggatcctccgtcccgatccccggggctgtggacaaggatgcagggaatttctctgtgcag acgtactctatagtaccagacgacacaccattccgtgtggagttccagaagaacgcagatgttagttccgtcctctctat tccacaaattgtcttgaacaggaagctagaccgagaggccagatcgagttataattttcaggttatcgcgaaagatggcg ggaatccaccgaagtctggttccctgtctgtcacactgaacgtccttgacattaatgataatcctccagttttcgaaaaa ccaatttataacatcacagtaaacgaagacattggagtaaacaaaaccatcaccattctaaatgcaacggacaaagacca aggagaaaatggtagagttgtatacagaatgagcccacgacaggattccaagatattttctctgttcgcggtcacagaat ctggcgaggtcaaggtcattagttcgcttgtatcagaacctggggaactctacagaatgtatgtgattgccagtgacaac gctaaacaacctctcatggctcaagccgaggttcatgtcaatgtcaaggacactcataataacagaccaagtatcaaagt ggatttattatcgaatacagacaaagcggaagtggtggaaaatggcgctgaaaatacagcagttgcgcatgtcactgtaa cggatccggatactggactgaatggctttgtgaattgttcagttgtaagtgatgaattcaagttgcaacgatttgatgtg cacgaatacaaagtcgtcgccaaacgatcatttgacagagagatgaagcaagaatatgaagtaactgtcggttgcaaaga cgcaggaaccccgcctctcaatagctcattttcgttcatagtgagagttatggatgaaaacgacaacgcgccttacttca gtaaaaattccgtacgagtcgaggtcaaggaaaacaacgacattggcgcgggactagttcgtgtctcggccaatgatttt gatgctggcaagaacgcagagattacatacgaattacagccatcggtatatgacttccggatagatcctaaatccggaat gatcagtgcttacttccgtttggatagagaaacaacgagtatgattcagttaaaagtgttcgctgtagatggtggaacac aaccgaaaactggaacggttgatgttgtcatagaaatcaaagacattaatgataacaaaccggaattccaaaatcagagt tttgagttcgccatttcagaacactctggtaaggatgccacggtaggacttctgattgccactgacaaggatttgggtga taacaagaaaattatcttctcgttactgacacaagatgttcccggaacaccttttgacgtccttcctaatggcactatca tagcaacagatgaccttgaccgtgagacaatagacaagtatcagttcactgttgtcgcctctgactctggtgaccccgtg caacaatcctccgccaaggtcaccgtcactgttttggacatcaatgaccaaagtccttatttcgtgtttcctagtgacat caatagcaccatagttatttcgtaccaaacattacctaatacggtcatagccaagcttgatacacacgacggggatgaag gactgaatgctaaagtcacttattttgctacagacaaaaagtattctgacatgtttcaaataaatagcatttcaggtcga attgtcctcatcaaagcacttacaactgacgatattggtaaaatacactttcgggattttcgcttcggataa |
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Protein
| Protein ID | pfu_aug1.0_18429.1_32913.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18429.1_32913.t1 MTIGISAQDDYVRFTADEEEPKGTYIGNIATKANISGQNLSSDDAATLEYRLLVQNNPHSELFHINERDGTLFVASRIDR ESICEFVDECILLLDVICRTASANFYKKIKIAVNITDINDNVPSFGKLTETLEMSEGSLEGSSVPIPGAVDKDAGNFSVQ TYSIVPDDTPFRVEFQKNADVSSVLSIPQIVLNRKLDREARSSYNFQVIAKDGGNPPKSGSLSVTLNVLDINDNPPVFEK PIYNITVNEDIGVNKTITILNATDKDQGENGRVVYRMSPRQDSKIFSLFAVTESGEVKVISSLVSEPGELYRMYVIASDN AKQPLMAQAEVHVNVKDTHNNRPSIKVDLLSNTDKAEVVENGAENTAVAHVTVTDPDTGLNGFVNCSVVSDEFKLQRFDV HEYKVVAKRSFDREMKQEYEVTVGCKDAGTPPLNSSFSFIVRVMDENDNAPYFSKNSVRVEVKENNDIGAGLVRVSANDF DAGKNAEITYELQPSVYDFRIDPKSGMISAYFRLDRETTSMIQLKVFAVDGGTQPKTGTVDVVIEIKDINDNKPEFQNQS FEFAISEHSGKDATVGLLIATDKDLGDNKKIIFSLLTQDVPGTPFDVLPNGTIIATDDLDRETIDKYQFTVVASDSGDPV QQSSAKVTVTVLDINDQSPYFVFPSDINSTIVISYQTLPNTVIAKLDTHDGDEGLNAKVTYFATDKKYSDMFQINSISGR IVLIKALTTDDIGKIHFRDFRFG |
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