Gene
| Gene Model ID | pfu_aug1.0_1843.1_37146 |
|---|---|
| Locus | scaffold1843.1 : 33306 ... 49862 : + |
| To GenomeBrowser | scaffold1843.1:33306..49862 |
| Genes list of scaffold | scaffold1843.1 |
| Synonym | pfu_aug2.0_219.1_30447 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1843.1_37146.t1 | 1 | 1 | Reprolysin | 176 | 289 | 7.9e-11 | 41.9 | 4.2e-14 | 1.2e-10 | 41.2 |
| pfu_aug1.0_1843.1_37146.t1 | 2 | 1 | Reprolysin_2 | 181 | 272 | 2.3e-08 | 34.2 | 9.2e-12 | 2.7e-08 | 34.0 |
| pfu_aug1.0_1843.1_37146.t1 | 1 | 1 | Reprolysin_5 | 181 | 246 | 4.2e-07 | 30.0 | 2.7e-10 | 8.0e-07 | 29.1 |
| pfu_aug1.0_1843.1_37146.t1 | 1 | 1 | Reprolysin_3 | 183 | 230 | 8.1e-08 | 32.8 | 2.7e-11 | 8.1e-08 | 32.8 |
| pfu_aug1.0_1843.1_37146.t1 | 1 | 1 | Reprolysin_4 | 187 | 270 | 1.2e-07 | 31.5 | 6.6e-11 | 2.0e-07 | 30.7 |
| pfu_aug1.0_1843.1_37146.t1 | 2 | 2 | Reprolysin_2 | 326 | 348 | 2.3e-08 | 34.2 | 0.69 | 2000.0 | -1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1843.1_37146.t1 | gi|300795046|ref|NP_001179415.1| | A disintegrin and metalloproteinase with thrombospondin motifs 18 precursor [Bos taurus] | 3.0e-14 |
Transcript
| Transcript ID | pfu_aug1.0_1843.1_37146.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1843.1_37146.t1 atgtgggaggcactatcagatttcacagaacctactgatgttgccgtaatagaggaaacaaaacaaatcaaacttggcaa aaatggattgatgccagaaaatttggattttaaacttaatcttgttcatggtagtaagcccgtgacactacatttgaatc gaaatggtcttggaaacgaaggaaaacaagtggccgttgtcaggagataccgcaacggaacagttgtcatggttcaagaa cacattccaaaagtgaaaaatgttgccttataccaggacaacgccacctttgccacgtttaccgtatcctgtgagacatc aaccactggtcgttgtagtcccgttcttcttggaagtttgaacatagagggagaggagtatgaattccatcctctagagg agagggctccaaaagagagaaggaaaagaagcgtgcgtcccggcggaaggaagagatggctttatgctgcttataaaaag tcgaggaaaccttgtaacaagttagattcaaacatcagtaaacatgacctttttgaggaatcaacgaatgaccccactgt tacaggttacgctcacgtcaggacagtatgtacgtcaaaaagtgcgtcaatcaatgaagatcatggaggatttggtggta tcacgactgcgacacacgaacttggacatagtcttggctccaaccatgatggcattggcaatccatgtccggccgctgac cagtacataatgaccgctctgggtggggagattacacctcataacaaactcaatccatggagattttcagactgcagcat ccagtactttatggactatattgaagagttagagatcaagggacagaactgtatgagagaagaacctatgaggattcacg aacaagagttccaagaacatatccgtgtacatccaggacagcgaatcgatccgaacactcagtgtcgtgagagactgggg aagtcttcatattacggttggggaggaggacttggtcgttttgctgacatatgtaccaatatggcctgtaagaatggtaa atcacaagagagcttcaacttatactatgctgcaagaggtacctcatgtggcgacaaaagagatgtgaatatggagatag aaagattggatgcgattatcgtctctgtcatcttccggaccataaaagagattgctgcttaa |
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Protein
| Protein ID | pfu_aug1.0_1843.1_37146.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1843.1_37146.t1 MWEALSDFTEPTDVAVIEETKQIKLGKNGLMPENLDFKLNLVHGSKPVTLHLNRNGLGNEGKQVAVVRRYRNGTVVMVQE HIPKVKNVALYQDNATFATFTVSCETSTTGRCSPVLLGSLNIEGEEYEFHPLEERAPKERRKRSVRPGGRKRWLYAAYKK SRKPCNKLDSNISKHDLFEESTNDPTVTGYAHVRTVCTSKSASINEDHGGFGGITTATHELGHSLGSNHDGIGNPCPAAD QYIMTALGGEITPHNKLNPWRFSDCSIQYFMDYIEELEIKGQNCMREEPMRIHEQEFQEHIRVHPGQRIDPNTQCRERLG KSSYYGWGGGLGRFADICTNMACKNGKSQESFNLYYAARGTSCGDKRDVNMEIERLDAIIVSVIFRTIKEIAA |
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