Gene
| Gene Model ID | pfu_aug1.0_1846.1_58666 |
|---|---|
| Locus | scaffold1846.1 : 11140 ... 33355 : - |
| To GenomeBrowser | scaffold1846.1:11140..33355 |
| Genes list of scaffold | scaffold1846.1 |
| Synonym | pfu_aug2.0_451.1_04186 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-orphan-HLH-d |
| Description | Best hit to BAA19936 BMAL1c [Homo sapiens] with 4e-11 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein contains one insignificant PAS domain. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1846.1_58666.t1 | 2 | 1 | HLH | 10 | 55 | 5.4e-09 | 35.6 | 2.2e-12 | 5.4e-09 | 35.6 |
| pfu_aug1.0_1846.1_58666.t1 | 2 | 2 | HLH | 163 | 170 | 5.4e-09 | 35.6 | 0.49 | 1200.0 | -0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1846.1_58666.t1 | gi|242020804|ref|XP_002430841.1| | hypoxia-inducible factor 1 alpha, putative [Pediculus humanus corporis] | 5.0e-13 |
Transcript
| Transcript ID | pfu_aug1.0_1846.1_58666.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1846.1_58666.t1 atgacaatatacgagaaattgcgcagggagggtgaaaagttgcgcagagaaaagttgaaccagaggattaaggaactggc agaggctgtgccctggttacctaagtctgaacaaaggccggaaaagacacgcattctgaaactggcagcgtcatatctca gatttcatcatggtctgaagaagaagatgttgatgaaggccctacctccatggctacaggatgagatttcccacttctct ttagaaaagcagattacagatggatttctgcttgtggtgtcgagaggtggaaacataatctacgtgtccgagacggtatc tgaggtgctcggccactcacaggaaactcactgtaactccatggaaactcgcctcaactcggagcacaatgtgacagaga tccctgaaaatatgcaggacaaaaagacatggcatgtgacaatggcacttcacaagcagctacgacagaaatttactgtg ctgcagcacaatatgcaggagcagcacagagaaatcaatgagttgcagcacaaactaacagagagcacaatgcatgtctc agagcacaatagcacagacagcactgatcgaaggtcacagatacttcaaaaaataaattctgttcagactgataaacaga tttacgcatttcaattgcgggaaaaaattgagaaatttcatgacgtcacagtgcaatttcaatgtttgtccgaggttcaa agcttgtttgtccgagaatttatgcattag |
|
Protein
| Protein ID | pfu_aug1.0_1846.1_58666.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1846.1_58666.t1 MTIYEKLRREGEKLRREKLNQRIKELAEAVPWLPKSEQRPEKTRILKLAASYLRFHHGLKKKMLMKALPPWLQDEISHFS LEKQITDGFLLVVSRGGNIIYVSETVSEVLGHSQETHCNSMETRLNSEHNVTEIPENMQDKKTWHVTMALHKQLRQKFTV LQHNMQEQHREINELQHKLTESTMHVSEHNSTDSTDRRSQILQKINSVQTDKQIYAFQLREKIEKFHDVTVQFQCLSEVQ SLFVREFMH |
|