Gene
| Gene Model ID | pfu_aug1.0_18479.1_25729 |
|---|---|
| Locus | scaffold18479.1 : 41416 ... 45733 : + |
| To GenomeBrowser | scaffold18479.1:41416..45733 |
| Genes list of scaffold | scaffold18479.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast best hit to NCBI XP_001901551 (Brugia malayi) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_18479.1_25729.t1 | 3 | 1 | EF-hand_1 | 11 | 27 | 8.9e-23 | 77.8 | 2.4e-06 | 0.0036 | 16.5 |
| pfu_aug1.0_18479.1_25729.t1 | 3 | 1 | EF-hand_6 | 11 | 26 | 2.8e-14 | 51.6 | 0.0018 | 2.6 | 8.1 |
| pfu_aug1.0_18479.1_25729.t1 | 2 | 1 | EF-hand_7 | 12 | 25 | 1.6e-20 | 72.9 | 0.0026 | 3.9 | 7.6 |
| pfu_aug1.0_18479.1_25729.t1 | 3 | 1 | EF-hand_5 | 12 | 25 | 3.5e-14 | 51.4 | 0.0019 | 2.9 | 7.4 |
| pfu_aug1.0_18479.1_25729.t1 | 2 | 1 | EF-hand_8 | 13 | 54 | 1.5e-19 | 69.3 | 3.5e-09 | 5.2e-06 | 25.9 |
| pfu_aug1.0_18479.1_25729.t1 | 3 | 2 | EF-hand_1 | 37 | 65 | 8.9e-23 | 77.8 | 2.5e-13 | 3.8e-10 | 38.3 |
| pfu_aug1.0_18479.1_25729.t1 | 3 | 2 | EF-hand_6 | 37 | 66 | 2.8e-14 | 51.6 | 8.7e-13 | 1.3e-09 | 37.1 |
| pfu_aug1.0_18479.1_25729.t1 | 2 | 2 | EF-hand_7 | 38 | 92 | 1.6e-20 | 72.9 | 7.8e-21 | 1.2e-17 | 63.8 |
| pfu_aug1.0_18479.1_25729.t1 | 3 | 2 | EF-hand_5 | 38 | 62 | 3.5e-14 | 51.4 | 1.1e-10 | 1.7e-07 | 30.2 |
| pfu_aug1.0_18479.1_25729.t1 | 2 | 2 | EF-hand_8 | 50 | 92 | 1.5e-19 | 69.3 | 1.1e-15 | 1.7e-12 | 46.7 |
| pfu_aug1.0_18479.1_25729.t1 | 3 | 3 | EF-hand_1 | 73 | 92 | 8.9e-23 | 77.8 | 5.9e-08 | 8.8e-05 | 21.5 |
| pfu_aug1.0_18479.1_25729.t1 | 3 | 3 | EF-hand_5 | 77 | 91 | 3.5e-14 | 51.4 | 0.00024 | 0.35 | 10.2 |
| pfu_aug1.0_18479.1_25729.t1 | 3 | 3 | EF-hand_6 | 79 | 91 | 2.8e-14 | 51.6 | 0.048 | 71.0 | 3.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_18479.1_25729.t1 | gi|158287848|ref|XP_309749.4| | AGAP010957-PA [Anopheles gambiae str. PEST] | 4.99983e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 2 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_18479.1_25729.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18479.1_25729.t1 atgtcgttcttcgaccgtatgaaatatgttgaaggaaatgggaccattgattttccggaattcttaacaatgatggccag gaaaatgaaagacactgatagcgaagaagaaatccgggaagctttcagagtatttgacaaagatgggaatggttttatta gtgcagctgaactgaggcatgtcatgacaaatttgggtgaaaaactgacagatgaagaagttgatgaaatgataagggaa gcagatatagatggtgatggacaagtgaattatgaaggtaaatgtacaatatgtcttgtttattttcatttactctgtgt cttagtctatcaagaacagtctttcccaaaactcgctagcctgacgcccgagtctcctaaaaaaaatttgagctag |
|
Protein
| Protein ID | pfu_aug1.0_18479.1_25729.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_18479.1_25729.t1 MSFFDRMKYVEGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIRE ADIDGDGQVNYEGKCTICLVYFHLLCVLVYQEQSFPKLASLTPESPKKNLS |
|