Gene
| Gene Model ID | pfu_aug1.0_1865.1_44163 |
|---|---|
| Locus | scaffold1865.1 : 20770 ... 35785 : - |
| To GenomeBrowser | scaffold1865.1:20770..35785 |
| Genes list of scaffold | scaffold1865.1 |
| Synonym | NA |
Manual annotation
| Study field | other |
|---|---|
| Gene name | calmodulin like |
| Description | Blast hit to DDBJ BC105380 (Bos taurus) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1865.1_44163.t1 | 2 | 1 | EF-hand_4 | 11 | 76 | 7.8e-09 | 35.2 | 0.00049 | 0.36 | 10.5 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 1 | EF-hand_8 | 13 | 34 | 3.6e-28 | 96.9 | 0.0011 | 0.82 | 9.3 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 1 | EF-hand_1 | 14 | 42 | 1.0e-36 | 121.3 | 6.8e-12 | 5.1e-09 | 34.8 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 1 | EF-hand_6 | 14 | 43 | 6.8e-30 | 100.2 | 2.7e-12 | 2.0e-09 | 36.5 |
| pfu_aug1.0_1865.1_44163.t1 | 2 | 1 | EF-hand_7 | 16 | 75 | 2.7e-31 | 107.4 | 3.8e-17 | 2.8e-14 | 52.9 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 1 | EF-hand_5 | 16 | 39 | 1.3e-19 | 68.5 | 1.8e-07 | 0.00013 | 21.1 |
| pfu_aug1.0_1865.1_44163.t1 | 2 | 1 | EF-hand_9 | 18 | 77 | 5.2e-18 | 64.7 | 4.0e-11 | 3.0e-08 | 33.4 |
| pfu_aug1.0_1865.1_44163.t1 | 2 | 1 | SPARC_Ca_bdg | 18 | 72 | 8.3e-09 | 35.4 | 9.5e-05 | 0.071 | 13.1 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 2 | EF-hand_8 | 27 | 77 | 3.6e-28 | 96.9 | 7.1e-16 | 5.3e-13 | 48.3 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 2 | EF-hand_1 | 50 | 77 | 1.0e-36 | 121.3 | 3.0e-11 | 2.2e-08 | 32.7 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 2 | EF-hand_6 | 51 | 78 | 6.8e-30 | 100.2 | 4.6e-07 | 0.00034 | 20.2 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 2 | EF-hand_5 | 51 | 73 | 1.3e-19 | 68.5 | 7.1e-06 | 0.0052 | 16.0 |
| pfu_aug1.0_1865.1_44163.t1 | 2 | 2 | SPARC_Ca_bdg | 74 | 147 | 8.3e-09 | 35.4 | 2.4e-07 | 0.00017 | 21.5 |
| pfu_aug1.0_1865.1_44163.t1 | 2 | 2 | EF-hand_4 | 86 | 150 | 7.8e-09 | 35.2 | 5.4e-09 | 4.0e-06 | 26.5 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 3 | EF-hand_8 | 88 | 107 | 3.6e-28 | 96.9 | 0.00018 | 0.13 | 11.8 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 3 | EF-hand_1 | 89 | 117 | 1.0e-36 | 121.3 | 2.6e-12 | 1.9e-09 | 36.1 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 3 | EF-hand_6 | 89 | 118 | 6.8e-30 | 100.2 | 1.9e-11 | 1.4e-08 | 33.9 |
| pfu_aug1.0_1865.1_44163.t1 | 2 | 2 | EF-hand_7 | 90 | 150 | 2.7e-31 | 107.4 | 3.2e-19 | 2.4e-16 | 59.6 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 3 | EF-hand_5 | 93 | 114 | 1.3e-19 | 68.5 | 2.6e-10 | 2.0e-07 | 30.0 |
| pfu_aug1.0_1865.1_44163.t1 | 2 | 2 | EF-hand_9 | 93 | 151 | 5.2e-18 | 64.7 | 6.2e-10 | 4.6e-07 | 29.6 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 4 | EF-hand_8 | 102 | 152 | 3.6e-28 | 96.9 | 1.3e-17 | 9.8e-15 | 53.9 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 4 | EF-hand_1 | 125 | 152 | 1.0e-36 | 121.3 | 5.7e-10 | 4.2e-07 | 28.7 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 4 | EF-hand_6 | 127 | 151 | 6.8e-30 | 100.2 | 2.2e-05 | 0.016 | 15.0 |
| pfu_aug1.0_1865.1_44163.t1 | 4 | 4 | EF-hand_5 | 128 | 150 | 1.3e-19 | 68.5 | 0.001 | 0.78 | 9.1 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1865.1_44163.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1865.1_44163.t1 atggctttacagaaaggttacacagaagaacaaattgatgagtttaaggaagcgtttagcctttttgacaaagatggcga tgggtgtataactaccaaagagttagggacagtaatgaggtcactaggtcaacagcccactgagcaggacttacaggaca tgatcaacgaagtagacgaggacgggagcggaactatagaattcagtgaatttcttgacatgatgagaaagaagggagga gagaacaaagatgacgaggatgaggaacttaaaggagcttttaaagtatttgataaggatggaaacggcaaaatctctgc atccgaactcagacaggtcatgaagaacttaggggaacaactgacagacgaggaaatagatgaaatgatcaaggaagccg atatagatggtgatgacgaggtggacttcgaggaatttaaaaggatgatgaatcacaaaccaagcggacactga |
|
Protein
| Protein ID | pfu_aug1.0_1865.1_44163.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1865.1_44163.t1 MALQKGYTEEQIDEFKEAFSLFDKDGDGCITTKELGTVMRSLGQQPTEQDLQDMINEVDEDGSGTIEFSEFLDMMRKKGG ENKDDEDEELKGAFKVFDKDGNGKISASELRQVMKNLGEQLTDEEIDEMIKEADIDGDDEVDFEEFKRMMNHKPSGH |
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